Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22005 and CA265_RS22010 are separated by 112 nucleotides CA265_RS22010 and CA265_RS22015 are separated by 165 nucleotides
CA265_RS22005: CA265_RS22005 - S9 family peptidase, at 5,413,158 to 5,415,284
_RS22005
CA265_RS22010: CA265_RS22010 - hypothetical protein, at 5,415,397 to 5,415,648
_RS22010
CA265_RS22015: CA265_RS22015 - UDP-2,3-diacylglucosamine hydrolase, at 5,415,814 to 5,416,563
_RS22015
Position (kb) 5415
5416 Strain fitness (log2 ratio) -1
0
1
2 at 5414.400 kb on + strand, within CA265_RS22005 at 5414.427 kb on + strand, within CA265_RS22005 at 5414.428 kb on - strand, within CA265_RS22005 at 5414.440 kb on + strand, within CA265_RS22005 at 5414.441 kb on - strand, within CA265_RS22005 at 5414.519 kb on - strand, within CA265_RS22005 at 5414.578 kb on - strand, within CA265_RS22005 at 5414.660 kb on - strand, within CA265_RS22005 at 5414.747 kb on + strand, within CA265_RS22005 at 5414.750 kb on - strand, within CA265_RS22005 at 5414.750 kb on - strand, within CA265_RS22005 at 5414.750 kb on - strand, within CA265_RS22005 at 5414.916 kb on - strand, within CA265_RS22005 at 5414.992 kb on + strand, within CA265_RS22005 at 5414.993 kb on - strand, within CA265_RS22005 at 5415.107 kb on + strand at 5415.108 kb on - strand at 5415.154 kb on + strand at 5415.158 kb on + strand at 5415.168 kb on - strand at 5415.190 kb on + strand at 5415.259 kb on - strand at 5415.312 kb on - strand at 5415.312 kb on - strand at 5415.331 kb on + strand at 5415.334 kb on + strand at 5415.337 kb on + strand at 5415.338 kb on - strand at 5415.389 kb on - strand at 5415.450 kb on + strand, within CA265_RS22010 at 5415.566 kb on - strand, within CA265_RS22010 at 5415.586 kb on + strand, within CA265_RS22010 at 5415.748 kb on + strand at 5415.757 kb on - strand at 5415.777 kb on + strand at 5416.543 kb on + strand at 5416.546 kb on + strand at 5416.546 kb on + strand at 5416.546 kb on + strand at 5416.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,414,400 + CA265_RS22005 0.58 -0.6 5,414,427 + CA265_RS22005 0.60 +0.2 5,414,428 - CA265_RS22005 0.60 -0.1 5,414,440 + CA265_RS22005 0.60 -0.6 5,414,441 - CA265_RS22005 0.60 +1.1 5,414,519 - CA265_RS22005 0.64 -1.2 5,414,578 - CA265_RS22005 0.67 +0.1 5,414,660 - CA265_RS22005 0.71 -1.3 5,414,747 + CA265_RS22005 0.75 +0.6 5,414,750 - CA265_RS22005 0.75 -0.4 5,414,750 - CA265_RS22005 0.75 +0.1 5,414,750 - CA265_RS22005 0.75 -0.2 5,414,916 - CA265_RS22005 0.83 +0.2 5,414,992 + CA265_RS22005 0.86 +0.4 5,414,993 - CA265_RS22005 0.86 +0.1 5,415,107 + -1.0 5,415,108 - +0.4 5,415,154 + -0.3 5,415,158 + -0.1 5,415,168 - +0.4 5,415,190 + -0.7 5,415,259 - +1.0 5,415,312 - +0.5 5,415,312 - -0.7 5,415,331 + +0.2 5,415,334 + -0.0 5,415,337 + -0.1 5,415,338 - -1.6 5,415,389 - +0.3 5,415,450 + CA265_RS22010 0.21 +0.8 5,415,566 - CA265_RS22010 0.67 -0.3 5,415,586 + CA265_RS22010 0.75 +0.3 5,415,748 + +1.0 5,415,757 - +0.9 5,415,777 + +1.8 5,416,543 + +0.8 5,416,546 + +0.6 5,416,546 + +0.5 5,416,546 + -0.2 5,416,547 - -0.1
Or see this region's nucleotide sequence