Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21825 and CA265_RS21830 are separated by 90 nucleotides CA265_RS21830 and CA265_RS21835 overlap by 29 nucleotides CA265_RS21835 and CA265_RS21840 are separated by 90 nucleotides CA265_RS21840 and CA265_RS21845 are separated by 73 nucleotides
CA265_RS21825: CA265_RS21825 - putative DNA modification/repair radical SAM protein, at 5,365,961 to 5,367,217
_RS21825
CA265_RS21830: CA265_RS21830 - hypothetical protein, at 5,367,308 to 5,367,670
_RS21830
CA265_RS21835: CA265_RS21835 - hypothetical protein, at 5,367,642 to 5,367,827
_RS21835
CA265_RS21840: CA265_RS21840 - phosphohydrolase, at 5,367,918 to 5,368,562
_RS21840
CA265_RS21845: CA265_RS21845 - transcriptional regulator, at 5,368,636 to 5,368,917
_RS21845
Position (kb) 5367
5368 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5366.740 kb on - strand, within CA265_RS21825 at 5366.800 kb on - strand, within CA265_RS21825 at 5366.809 kb on - strand, within CA265_RS21825 at 5366.809 kb on - strand, within CA265_RS21825 at 5366.891 kb on + strand, within CA265_RS21825 at 5366.943 kb on - strand, within CA265_RS21825 at 5366.955 kb on - strand, within CA265_RS21825 at 5366.975 kb on + strand, within CA265_RS21825 at 5366.976 kb on - strand, within CA265_RS21825 at 5367.005 kb on + strand, within CA265_RS21825 at 5367.020 kb on - strand, within CA265_RS21825 at 5367.020 kb on - strand, within CA265_RS21825 at 5367.075 kb on + strand, within CA265_RS21825 at 5367.075 kb on + strand, within CA265_RS21825 at 5367.076 kb on - strand, within CA265_RS21825 at 5367.076 kb on - strand, within CA265_RS21825 at 5367.218 kb on - strand at 5367.225 kb on + strand at 5367.302 kb on + strand at 5367.302 kb on + strand at 5367.361 kb on + strand, within CA265_RS21830 at 5367.367 kb on - strand, within CA265_RS21830 at 5367.379 kb on - strand, within CA265_RS21830 at 5367.381 kb on + strand, within CA265_RS21830 at 5367.382 kb on - strand, within CA265_RS21830 at 5367.525 kb on - strand, within CA265_RS21830 at 5367.525 kb on - strand, within CA265_RS21830 at 5367.623 kb on - strand, within CA265_RS21830 at 5367.653 kb on + strand at 5367.656 kb on + strand at 5367.676 kb on + strand, within CA265_RS21835 at 5367.733 kb on + strand, within CA265_RS21835 at 5367.745 kb on - strand, within CA265_RS21835 at 5367.752 kb on + strand, within CA265_RS21835 at 5367.825 kb on + strand at 5367.826 kb on - strand at 5367.826 kb on - strand at 5367.857 kb on + strand at 5367.858 kb on - strand at 5367.886 kb on + strand at 5367.886 kb on + strand at 5367.907 kb on + strand at 5367.908 kb on - strand at 5367.919 kb on + strand at 5367.923 kb on + strand at 5367.956 kb on - strand at 5367.965 kb on + strand at 5367.966 kb on - strand at 5368.052 kb on + strand, within CA265_RS21840 at 5368.112 kb on + strand, within CA265_RS21840 at 5368.129 kb on - strand, within CA265_RS21840 at 5368.155 kb on - strand, within CA265_RS21840 at 5368.155 kb on - strand, within CA265_RS21840 at 5368.233 kb on - strand, within CA265_RS21840 at 5368.233 kb on - strand, within CA265_RS21840 at 5368.343 kb on + strand, within CA265_RS21840 at 5368.481 kb on + strand, within CA265_RS21840 at 5368.515 kb on + strand at 5368.515 kb on + strand at 5368.553 kb on + strand at 5368.585 kb on + strand at 5368.708 kb on + strand, within CA265_RS21845 at 5368.717 kb on + strand, within CA265_RS21845 at 5368.770 kb on + strand, within CA265_RS21845 at 5368.811 kb on - strand, within CA265_RS21845
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,366,740 - CA265_RS21825 0.62 +0.2 5,366,800 - CA265_RS21825 0.67 +1.0 5,366,809 - CA265_RS21825 0.67 -1.8 5,366,809 - CA265_RS21825 0.67 -1.1 5,366,891 + CA265_RS21825 0.74 +0.0 5,366,943 - CA265_RS21825 0.78 +0.3 5,366,955 - CA265_RS21825 0.79 -0.6 5,366,975 + CA265_RS21825 0.81 -0.3 5,366,976 - CA265_RS21825 0.81 +0.7 5,367,005 + CA265_RS21825 0.83 +0.6 5,367,020 - CA265_RS21825 0.84 +1.7 5,367,020 - CA265_RS21825 0.84 +0.1 5,367,075 + CA265_RS21825 0.89 -0.2 5,367,075 + CA265_RS21825 0.89 -0.4 5,367,076 - CA265_RS21825 0.89 +1.1 5,367,076 - CA265_RS21825 0.89 -0.6 5,367,218 - +0.0 5,367,225 + -2.5 5,367,302 + +0.7 5,367,302 + +0.2 5,367,361 + CA265_RS21830 0.15 +0.5 5,367,367 - CA265_RS21830 0.16 +0.2 5,367,379 - CA265_RS21830 0.20 -1.0 5,367,381 + CA265_RS21830 0.20 -0.5 5,367,382 - CA265_RS21830 0.20 -0.2 5,367,525 - CA265_RS21830 0.60 -0.6 5,367,525 - CA265_RS21830 0.60 -0.2 5,367,623 - CA265_RS21830 0.87 +0.3 5,367,653 + +0.6 5,367,656 + -0.0 5,367,676 + CA265_RS21835 0.18 -1.8 5,367,733 + CA265_RS21835 0.49 +2.2 5,367,745 - CA265_RS21835 0.55 +0.5 5,367,752 + CA265_RS21835 0.59 +0.4 5,367,825 + +0.1 5,367,826 - +0.3 5,367,826 - +1.6 5,367,857 + +1.1 5,367,858 - +0.6 5,367,886 + -0.1 5,367,886 + +0.0 5,367,907 + +0.9 5,367,908 - -1.2 5,367,919 + +0.5 5,367,923 + +0.6 5,367,956 - -0.4 5,367,965 + +0.2 5,367,966 - +0.0 5,368,052 + CA265_RS21840 0.21 +0.7 5,368,112 + CA265_RS21840 0.30 +0.4 5,368,129 - CA265_RS21840 0.33 +0.4 5,368,155 - CA265_RS21840 0.37 -0.5 5,368,155 - CA265_RS21840 0.37 -1.0 5,368,233 - CA265_RS21840 0.49 +0.4 5,368,233 - CA265_RS21840 0.49 +1.4 5,368,343 + CA265_RS21840 0.66 -0.0 5,368,481 + CA265_RS21840 0.87 -0.0 5,368,515 + -0.8 5,368,515 + +0.3 5,368,553 + -0.1 5,368,585 + -0.4 5,368,708 + CA265_RS21845 0.26 -0.8 5,368,717 + CA265_RS21845 0.29 -0.0 5,368,770 + CA265_RS21845 0.48 -0.8 5,368,811 - CA265_RS21845 0.62 -1.4
Or see this region's nucleotide sequence