Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21310

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21305 and CA265_RS21310 are separated by 99 nucleotidesCA265_RS21310 and CA265_RS21315 are separated by 95 nucleotidesCA265_RS21315 and CA265_RS21320 are separated by 133 nucleotides CA265_RS21305: CA265_RS21305 - hypothetical protein, at 5,255,198 to 5,256,706 _RS21305 CA265_RS21310: CA265_RS21310 - hypothetical protein, at 5,256,806 to 5,257,333 _RS21310 CA265_RS21315: CA265_RS21315 - hypothetical protein, at 5,257,429 to 5,257,998 _RS21315 CA265_RS21320: CA265_RS21320 - hypothetical protein, at 5,258,132 to 5,258,317 _RS21320 Position (kb) 5256 5257 5258Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5255.827 kb on - strand, within CA265_RS21305at 5255.846 kb on - strand, within CA265_RS21305at 5255.881 kb on + strand, within CA265_RS21305at 5255.944 kb on + strand, within CA265_RS21305at 5255.948 kb on + strand, within CA265_RS21305at 5255.949 kb on - strand, within CA265_RS21305at 5255.949 kb on - strand, within CA265_RS21305at 5255.986 kb on - strand, within CA265_RS21305at 5256.041 kb on - strand, within CA265_RS21305at 5256.089 kb on + strandat 5256.108 kb on - strand, within CA265_RS21305at 5256.118 kb on + strand, within CA265_RS21305at 5256.118 kb on + strand, within CA265_RS21305at 5256.119 kb on - strand, within CA265_RS21305at 5256.128 kb on - strand, within CA265_RS21305at 5256.151 kb on + strand, within CA265_RS21305at 5256.152 kb on - strand, within CA265_RS21305at 5256.182 kb on - strand, within CA265_RS21305at 5256.213 kb on + strand, within CA265_RS21305at 5256.220 kb on + strand, within CA265_RS21305at 5256.220 kb on + strand, within CA265_RS21305at 5256.221 kb on - strand, within CA265_RS21305at 5256.268 kb on + strand, within CA265_RS21305at 5256.268 kb on + strand, within CA265_RS21305at 5256.269 kb on - strand, within CA265_RS21305at 5256.461 kb on - strand, within CA265_RS21305at 5256.541 kb on - strand, within CA265_RS21305at 5256.584 kb on + strandat 5256.585 kb on - strandat 5256.634 kb on + strandat 5256.744 kb on - strandat 5256.764 kb on - strandat 5256.822 kb on - strandat 5256.822 kb on - strandat 5256.847 kb on + strandat 5256.864 kb on + strand, within CA265_RS21310at 5256.864 kb on + strand, within CA265_RS21310at 5256.865 kb on - strand, within CA265_RS21310at 5256.869 kb on - strand, within CA265_RS21310at 5256.955 kb on + strand, within CA265_RS21310at 5256.976 kb on + strand, within CA265_RS21310at 5256.986 kb on + strand, within CA265_RS21310at 5256.987 kb on - strand, within CA265_RS21310at 5256.987 kb on - strand, within CA265_RS21310at 5256.988 kb on + strand, within CA265_RS21310at 5257.059 kb on + strand, within CA265_RS21310at 5257.060 kb on - strand, within CA265_RS21310at 5257.060 kb on - strand, within CA265_RS21310at 5257.070 kb on - strand, within CA265_RS21310at 5257.139 kb on - strand, within CA265_RS21310at 5257.151 kb on - strand, within CA265_RS21310at 5257.192 kb on + strand, within CA265_RS21310at 5257.192 kb on + strand, within CA265_RS21310at 5257.193 kb on - strand, within CA265_RS21310at 5257.196 kb on - strand, within CA265_RS21310at 5257.196 kb on - strand, within CA265_RS21310at 5257.249 kb on + strand, within CA265_RS21310at 5257.278 kb on + strand, within CA265_RS21310at 5257.278 kb on + strand, within CA265_RS21310at 5257.283 kb on - strandat 5257.337 kb on + strandat 5257.346 kb on - strandat 5257.558 kb on + strand, within CA265_RS21315at 5257.626 kb on + strand, within CA265_RS21315at 5257.626 kb on + strand, within CA265_RS21315at 5257.666 kb on - strand, within CA265_RS21315at 5257.666 kb on - strand, within CA265_RS21315at 5257.667 kb on + strand, within CA265_RS21315at 5257.671 kb on + strand, within CA265_RS21315at 5257.672 kb on - strand, within CA265_RS21315at 5257.887 kb on + strand, within CA265_RS21315at 5257.920 kb on + strand, within CA265_RS21315at 5258.002 kb on + strandat 5258.019 kb on + strandat 5258.041 kb on + strandat 5258.110 kb on - strandat 5258.117 kb on + strandat 5258.136 kb on + strandat 5258.150 kb on + strandat 5258.162 kb on + strand, within CA265_RS21320at 5258.243 kb on + strand, within CA265_RS21320at 5258.265 kb on - strand, within CA265_RS21320at 5258.275 kb on - strand, within CA265_RS21320at 5258.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,255,827 - CA265_RS21305 0.42 -1.9
5,255,846 - CA265_RS21305 0.43 +1.2
5,255,881 + CA265_RS21305 0.45 +0.2
5,255,944 + CA265_RS21305 0.49 -0.6
5,255,948 + CA265_RS21305 0.50 +0.2
5,255,949 - CA265_RS21305 0.50 +0.4
5,255,949 - CA265_RS21305 0.50 -0.4
5,255,986 - CA265_RS21305 0.52 -0.1
5,256,041 - CA265_RS21305 0.56 -0.0
5,256,089 + +3.2
5,256,108 - CA265_RS21305 0.60 +1.5
5,256,118 + CA265_RS21305 0.61 -0.6
5,256,118 + CA265_RS21305 0.61 +0.6
5,256,119 - CA265_RS21305 0.61 +0.5
5,256,128 - CA265_RS21305 0.62 -0.9
5,256,151 + CA265_RS21305 0.63 +0.4
5,256,152 - CA265_RS21305 0.63 +0.8
5,256,182 - CA265_RS21305 0.65 +1.0
5,256,213 + CA265_RS21305 0.67 -0.2
5,256,220 + CA265_RS21305 0.68 +0.3
5,256,220 + CA265_RS21305 0.68 -0.4
5,256,221 - CA265_RS21305 0.68 -0.2
5,256,268 + CA265_RS21305 0.71 -0.4
5,256,268 + CA265_RS21305 0.71 -0.1
5,256,269 - CA265_RS21305 0.71 +0.6
5,256,461 - CA265_RS21305 0.84 -1.3
5,256,541 - CA265_RS21305 0.89 +1.7
5,256,584 + +0.6
5,256,585 - +0.3
5,256,634 + -1.5
5,256,744 - -0.6
5,256,764 - +0.4
5,256,822 - -0.2
5,256,822 - +0.1
5,256,847 + -0.2
5,256,864 + CA265_RS21310 0.11 -0.4
5,256,864 + CA265_RS21310 0.11 +1.0
5,256,865 - CA265_RS21310 0.11 -0.1
5,256,869 - CA265_RS21310 0.12 -0.7
5,256,955 + CA265_RS21310 0.28 +0.3
5,256,976 + CA265_RS21310 0.32 +1.3
5,256,986 + CA265_RS21310 0.34 +1.0
5,256,987 - CA265_RS21310 0.34 +0.2
5,256,987 - CA265_RS21310 0.34 +0.5
5,256,988 + CA265_RS21310 0.34 +0.8
5,257,059 + CA265_RS21310 0.48 -1.6
5,257,060 - CA265_RS21310 0.48 -0.0
5,257,060 - CA265_RS21310 0.48 +0.1
5,257,070 - CA265_RS21310 0.50 +0.6
5,257,139 - CA265_RS21310 0.63 -0.4
5,257,151 - CA265_RS21310 0.65 +0.1
5,257,192 + CA265_RS21310 0.73 +0.1
5,257,192 + CA265_RS21310 0.73 -0.9
5,257,193 - CA265_RS21310 0.73 +0.1
5,257,196 - CA265_RS21310 0.74 +0.1
5,257,196 - CA265_RS21310 0.74 +0.2
5,257,249 + CA265_RS21310 0.84 +0.7
5,257,278 + CA265_RS21310 0.89 +0.7
5,257,278 + CA265_RS21310 0.89 +1.2
5,257,283 - -1.0
5,257,337 + -0.6
5,257,346 - -0.7
5,257,558 + CA265_RS21315 0.23 -0.1
5,257,626 + CA265_RS21315 0.35 -0.2
5,257,626 + CA265_RS21315 0.35 -0.8
5,257,666 - CA265_RS21315 0.42 +0.2
5,257,666 - CA265_RS21315 0.42 +0.0
5,257,667 + CA265_RS21315 0.42 +0.3
5,257,671 + CA265_RS21315 0.42 +0.2
5,257,672 - CA265_RS21315 0.43 -0.7
5,257,887 + CA265_RS21315 0.80 +1.5
5,257,920 + CA265_RS21315 0.86 +1.4
5,258,002 + -0.0
5,258,019 + +0.2
5,258,041 + -1.2
5,258,110 - +0.2
5,258,117 + +0.2
5,258,136 + -0.5
5,258,150 + -0.5
5,258,162 + CA265_RS21320 0.16 +0.4
5,258,243 + CA265_RS21320 0.60 +0.7
5,258,265 - CA265_RS21320 0.72 +0.1
5,258,275 - CA265_RS21320 0.77 -0.6
5,258,310 - -0.5

Or see this region's nucleotide sequence