Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03440 and CA265_RS03445 overlap by 1 nucleotides CA265_RS03445 and CA265_RS03450 are separated by 65 nucleotides CA265_RS03450 and CA265_RS03455 are separated by 20 nucleotides CA265_RS03455 and CA265_RS03460 are separated by 187 nucleotides
CA265_RS03440: CA265_RS03440 - hypothetical protein, at 831,561 to 832,874
_RS03440
CA265_RS03445: CA265_RS03445 - S-adenosylmethionine decarboxylase, at 832,874 to 833,227
_RS03445
CA265_RS03450: CA265_RS03450 - hypothetical protein, at 833,293 to 833,688
_RS03450
CA265_RS03455: CA265_RS03455 - cysteine methyltransferase, at 833,709 to 834,188
_RS03455
CA265_RS03460: CA265_RS03460 - ABC transporter permease, at 834,376 to 835,041
_RS03460
Position (kb) 833
834 Strain fitness (log2 ratio) -1
0
1
2
3 at 832.322 kb on + strand, within CA265_RS03440 at 832.368 kb on + strand, within CA265_RS03440 at 832.369 kb on - strand, within CA265_RS03440 at 832.412 kb on + strand, within CA265_RS03440 at 832.414 kb on + strand, within CA265_RS03440 at 832.418 kb on + strand, within CA265_RS03440 at 832.433 kb on - strand, within CA265_RS03440 at 832.446 kb on - strand, within CA265_RS03440 at 832.447 kb on + strand, within CA265_RS03440 at 832.455 kb on - strand, within CA265_RS03440 at 832.473 kb on - strand, within CA265_RS03440 at 832.473 kb on - strand, within CA265_RS03440 at 832.482 kb on - strand, within CA265_RS03440 at 832.575 kb on - strand, within CA265_RS03440 at 832.575 kb on - strand, within CA265_RS03440 at 832.576 kb on + strand, within CA265_RS03440 at 832.576 kb on + strand, within CA265_RS03440 at 832.629 kb on + strand, within CA265_RS03440 at 832.630 kb on - strand, within CA265_RS03440 at 832.652 kb on + strand, within CA265_RS03440 at 832.674 kb on + strand, within CA265_RS03440 at 832.795 kb on + strand at 832.806 kb on - strand at 832.806 kb on - strand at 832.861 kb on - strand at 832.905 kb on - strand at 832.905 kb on - strand at 832.925 kb on + strand, within CA265_RS03445 at 832.926 kb on - strand, within CA265_RS03445 at 833.020 kb on + strand, within CA265_RS03445 at 833.020 kb on + strand, within CA265_RS03445 at 833.020 kb on + strand, within CA265_RS03445 at 833.021 kb on - strand, within CA265_RS03445 at 833.026 kb on + strand, within CA265_RS03445 at 833.027 kb on - strand, within CA265_RS03445 at 833.114 kb on - strand, within CA265_RS03445 at 833.127 kb on - strand, within CA265_RS03445 at 833.127 kb on - strand, within CA265_RS03445 at 833.146 kb on + strand, within CA265_RS03445 at 833.147 kb on - strand, within CA265_RS03445 at 833.147 kb on - strand, within CA265_RS03445 at 833.204 kb on - strand at 833.220 kb on + strand at 833.220 kb on + strand at 833.240 kb on - strand at 833.240 kb on - strand at 833.260 kb on - strand at 833.270 kb on + strand at 833.318 kb on + strand at 833.457 kb on + strand, within CA265_RS03450 at 833.461 kb on + strand, within CA265_RS03450 at 833.494 kb on + strand, within CA265_RS03450 at 833.495 kb on - strand, within CA265_RS03450 at 833.495 kb on - strand, within CA265_RS03450 at 833.495 kb on - strand, within CA265_RS03450 at 833.543 kb on - strand, within CA265_RS03450 at 833.578 kb on - strand, within CA265_RS03450 at 833.635 kb on - strand, within CA265_RS03450 at 833.653 kb on + strand at 833.682 kb on + strand at 833.683 kb on - strand at 833.760 kb on + strand, within CA265_RS03455 at 833.760 kb on + strand, within CA265_RS03455 at 833.760 kb on + strand, within CA265_RS03455 at 833.760 kb on + strand, within CA265_RS03455 at 833.824 kb on - strand, within CA265_RS03455 at 833.886 kb on + strand, within CA265_RS03455 at 833.944 kb on - strand, within CA265_RS03455 at 834.054 kb on + strand, within CA265_RS03455 at 834.065 kb on + strand, within CA265_RS03455 at 834.111 kb on - strand, within CA265_RS03455 at 834.114 kb on + strand, within CA265_RS03455 at 834.115 kb on - strand, within CA265_RS03455 at 834.115 kb on - strand, within CA265_RS03455 at 834.115 kb on - strand, within CA265_RS03455 at 834.139 kb on - strand, within CA265_RS03455 at 834.139 kb on - strand, within CA265_RS03455 at 834.170 kb on + strand at 834.171 kb on - strand at 834.181 kb on + strand at 834.246 kb on - strand at 834.264 kb on - strand at 834.267 kb on + strand at 834.307 kb on - strand at 834.326 kb on + strand at 834.357 kb on + strand at 834.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 832,322 + CA265_RS03440 0.58 +0.2 832,368 + CA265_RS03440 0.61 -0.8 832,369 - CA265_RS03440 0.61 -0.1 832,412 + CA265_RS03440 0.65 -0.1 832,414 + CA265_RS03440 0.65 +0.3 832,418 + CA265_RS03440 0.65 -0.5 832,433 - CA265_RS03440 0.66 -0.5 832,446 - CA265_RS03440 0.67 -0.5 832,447 + CA265_RS03440 0.67 -0.3 832,455 - CA265_RS03440 0.68 -0.2 832,473 - CA265_RS03440 0.69 -0.6 832,473 - CA265_RS03440 0.69 -0.3 832,482 - CA265_RS03440 0.70 -0.2 832,575 - CA265_RS03440 0.77 +0.1 832,575 - CA265_RS03440 0.77 -0.1 832,576 + CA265_RS03440 0.77 +0.1 832,576 + CA265_RS03440 0.77 +0.1 832,629 + CA265_RS03440 0.81 -0.7 832,630 - CA265_RS03440 0.81 -0.8 832,652 + CA265_RS03440 0.83 -1.3 832,674 + CA265_RS03440 0.85 -0.5 832,795 + +0.3 832,806 - -0.1 832,806 - -1.0 832,861 - -0.2 832,905 - -0.0 832,905 - -0.1 832,925 + CA265_RS03445 0.14 +3.5 832,926 - CA265_RS03445 0.15 +0.3 833,020 + CA265_RS03445 0.41 -0.2 833,020 + CA265_RS03445 0.41 -0.5 833,020 + CA265_RS03445 0.41 +0.0 833,021 - CA265_RS03445 0.42 +0.1 833,026 + CA265_RS03445 0.43 -0.3 833,027 - CA265_RS03445 0.43 +0.4 833,114 - CA265_RS03445 0.68 +0.5 833,127 - CA265_RS03445 0.71 -0.3 833,127 - CA265_RS03445 0.71 -0.7 833,146 + CA265_RS03445 0.77 +0.2 833,147 - CA265_RS03445 0.77 +0.4 833,147 - CA265_RS03445 0.77 +0.4 833,204 - -0.3 833,220 + -0.5 833,220 + +0.4 833,240 - -1.0 833,240 - -0.0 833,260 - -0.3 833,270 + -0.1 833,318 + -0.5 833,457 + CA265_RS03450 0.41 -0.2 833,461 + CA265_RS03450 0.42 +0.1 833,494 + CA265_RS03450 0.51 -0.3 833,495 - CA265_RS03450 0.51 +0.9 833,495 - CA265_RS03450 0.51 +1.0 833,495 - CA265_RS03450 0.51 +0.3 833,543 - CA265_RS03450 0.63 -0.3 833,578 - CA265_RS03450 0.72 -0.0 833,635 - CA265_RS03450 0.86 +0.3 833,653 + -0.0 833,682 + +0.5 833,683 - -0.8 833,760 + CA265_RS03455 0.11 -0.4 833,760 + CA265_RS03455 0.11 -0.0 833,760 + CA265_RS03455 0.11 -0.7 833,760 + CA265_RS03455 0.11 +0.0 833,824 - CA265_RS03455 0.24 +0.5 833,886 + CA265_RS03455 0.37 -0.5 833,944 - CA265_RS03455 0.49 +0.1 834,054 + CA265_RS03455 0.72 -0.1 834,065 + CA265_RS03455 0.74 +0.5 834,111 - CA265_RS03455 0.84 -0.1 834,114 + CA265_RS03455 0.84 -0.0 834,115 - CA265_RS03455 0.85 -0.6 834,115 - CA265_RS03455 0.85 +0.4 834,115 - CA265_RS03455 0.85 -0.1 834,139 - CA265_RS03455 0.90 -0.1 834,139 - CA265_RS03455 0.90 -0.0 834,170 + +0.3 834,171 - +0.1 834,181 + -0.0 834,246 - -0.5 834,264 - -0.4 834,267 + +0.3 834,307 - -0.3 834,326 + +0.1 834,357 + -0.0 834,357 + +0.3
Or see this region's nucleotide sequence