Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03270 and CA265_RS03275 are separated by 114 nucleotides CA265_RS03275 and CA265_RS03280 overlap by 8 nucleotides CA265_RS03280 and CA265_RS03285 are separated by 72 nucleotides
CA265_RS03270: CA265_RS03270 - hypothetical protein, at 801,201 to 801,722
_RS03270
CA265_RS03275: CA265_RS03275 - hypothetical protein, at 801,837 to 802,022
_RS03275
CA265_RS03280: CA265_RS03280 - hypothetical protein, at 802,015 to 802,557
_RS03280
CA265_RS03285: CA265_RS03285 - hypothetical protein, at 802,630 to 803,361
_RS03285
Position (kb) 802
803 Strain fitness (log2 ratio) -1
0
1 at 801.045 kb on + strand at 801.173 kb on - strand at 801.177 kb on - strand at 801.187 kb on - strand at 801.223 kb on + strand at 801.292 kb on + strand, within CA265_RS03270 at 801.293 kb on - strand, within CA265_RS03270 at 801.327 kb on - strand, within CA265_RS03270 at 801.416 kb on + strand, within CA265_RS03270 at 801.416 kb on + strand, within CA265_RS03270 at 801.416 kb on + strand, within CA265_RS03270 at 801.417 kb on - strand, within CA265_RS03270 at 801.417 kb on - strand, within CA265_RS03270 at 801.461 kb on + strand, within CA265_RS03270 at 801.476 kb on - strand, within CA265_RS03270 at 801.482 kb on - strand, within CA265_RS03270 at 801.502 kb on - strand, within CA265_RS03270 at 801.535 kb on + strand, within CA265_RS03270 at 801.596 kb on - strand, within CA265_RS03270 at 801.620 kb on + strand, within CA265_RS03270 at 801.721 kb on - strand at 801.732 kb on - strand at 801.774 kb on + strand at 801.832 kb on - strand at 801.844 kb on - strand at 801.918 kb on + strand, within CA265_RS03275 at 801.918 kb on + strand, within CA265_RS03275 at 801.971 kb on - strand, within CA265_RS03275 at 802.023 kb on - strand at 802.069 kb on + strand at 802.070 kb on - strand, within CA265_RS03280 at 802.128 kb on - strand, within CA265_RS03280 at 802.225 kb on + strand, within CA265_RS03280 at 802.247 kb on + strand, within CA265_RS03280 at 802.431 kb on - strand, within CA265_RS03280 at 802.510 kb on - strand at 802.672 kb on - strand at 802.688 kb on + strand at 802.692 kb on - strand at 802.763 kb on + strand, within CA265_RS03285 at 802.820 kb on - strand, within CA265_RS03285 at 802.822 kb on - strand, within CA265_RS03285 at 802.836 kb on + strand, within CA265_RS03285 at 802.866 kb on + strand, within CA265_RS03285 at 802.883 kb on + strand, within CA265_RS03285 at 802.904 kb on + strand, within CA265_RS03285 at 802.904 kb on + strand, within CA265_RS03285 at 802.972 kb on - strand, within CA265_RS03285 at 802.978 kb on - strand, within CA265_RS03285 at 803.006 kb on - strand, within CA265_RS03285 at 803.080 kb on + strand, within CA265_RS03285 at 803.097 kb on - strand, within CA265_RS03285 at 803.126 kb on + strand, within CA265_RS03285 at 803.127 kb on - strand, within CA265_RS03285 at 803.127 kb on - strand, within CA265_RS03285 at 803.143 kb on - strand, within CA265_RS03285 at 803.143 kb on - strand, within CA265_RS03285 at 803.187 kb on + strand, within CA265_RS03285 at 803.237 kb on + strand, within CA265_RS03285 at 803.238 kb on - strand, within CA265_RS03285 at 803.238 kb on - strand, within CA265_RS03285 at 803.274 kb on - strand, within CA265_RS03285 at 803.294 kb on - strand at 803.319 kb on - strand at 803.333 kb on + strand at 803.334 kb on - strand at 803.379 kb on + strand at 803.380 kb on - strand at 803.388 kb on - strand at 803.388 kb on - strand at 803.390 kb on - strand at 803.392 kb on + strand at 803.395 kb on - strand at 803.395 kb on - strand at 803.454 kb on + strand at 803.455 kb on - strand at 803.458 kb on + strand at 803.458 kb on + strand at 803.459 kb on - strand at 803.491 kb on - strand at 803.491 kb on - strand at 803.495 kb on - strand at 803.496 kb on + strand at 803.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 801,045 + +0.6 801,173 - -0.2 801,177 - +0.2 801,187 - +0.0 801,223 + +0.6 801,292 + CA265_RS03270 0.17 +0.1 801,293 - CA265_RS03270 0.18 -0.4 801,327 - CA265_RS03270 0.24 +0.1 801,416 + CA265_RS03270 0.41 +0.9 801,416 + CA265_RS03270 0.41 +0.2 801,416 + CA265_RS03270 0.41 -0.4 801,417 - CA265_RS03270 0.41 +0.1 801,417 - CA265_RS03270 0.41 +0.2 801,461 + CA265_RS03270 0.50 -0.1 801,476 - CA265_RS03270 0.53 -0.3 801,482 - CA265_RS03270 0.54 +0.4 801,502 - CA265_RS03270 0.58 +0.3 801,535 + CA265_RS03270 0.64 -1.0 801,596 - CA265_RS03270 0.76 -0.2 801,620 + CA265_RS03270 0.80 +0.1 801,721 - +0.4 801,732 - -0.1 801,774 + -0.9 801,832 - -0.3 801,844 - -0.9 801,918 + CA265_RS03275 0.44 -0.2 801,918 + CA265_RS03275 0.44 -0.5 801,971 - CA265_RS03275 0.72 -1.3 802,023 - +0.2 802,069 + -0.0 802,070 - CA265_RS03280 0.10 +0.2 802,128 - CA265_RS03280 0.21 -0.2 802,225 + CA265_RS03280 0.39 -0.6 802,247 + CA265_RS03280 0.43 +1.1 802,431 - CA265_RS03280 0.77 +0.7 802,510 - -0.5 802,672 - +0.0 802,688 + -0.2 802,692 - -0.2 802,763 + CA265_RS03285 0.18 -0.9 802,820 - CA265_RS03285 0.26 -0.0 802,822 - CA265_RS03285 0.26 -1.7 802,836 + CA265_RS03285 0.28 -0.5 802,866 + CA265_RS03285 0.32 -0.6 802,883 + CA265_RS03285 0.35 -0.5 802,904 + CA265_RS03285 0.37 +0.8 802,904 + CA265_RS03285 0.37 -0.5 802,972 - CA265_RS03285 0.47 -0.4 802,978 - CA265_RS03285 0.48 -0.5 803,006 - CA265_RS03285 0.51 -0.2 803,080 + CA265_RS03285 0.61 +0.1 803,097 - CA265_RS03285 0.64 +0.2 803,126 + CA265_RS03285 0.68 +0.5 803,127 - CA265_RS03285 0.68 +0.8 803,127 - CA265_RS03285 0.68 +0.2 803,143 - CA265_RS03285 0.70 -0.3 803,143 - CA265_RS03285 0.70 +0.4 803,187 + CA265_RS03285 0.76 -0.9 803,237 + CA265_RS03285 0.83 +0.4 803,238 - CA265_RS03285 0.83 +0.5 803,238 - CA265_RS03285 0.83 +0.2 803,274 - CA265_RS03285 0.88 +0.0 803,294 - +0.3 803,319 - -0.7 803,333 + +0.7 803,334 - +0.9 803,379 + +0.1 803,380 - -0.0 803,388 - +0.2 803,388 - +0.6 803,390 - +0.5 803,392 + +0.5 803,395 - -0.7 803,395 - +0.1 803,454 + -0.7 803,455 - +0.4 803,458 + +0.9 803,458 + +0.1 803,459 - +0.3 803,491 - -0.3 803,491 - +0.5 803,495 - -0.9 803,496 + +0.0 803,499 + -0.5
Or see this region's nucleotide sequence