Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02790 and CA265_RS02795 are separated by 340 nucleotides CA265_RS02795 and CA265_RS02800 are separated by 298 nucleotides CA265_RS02800 and CA265_RS02805 are separated by 115 nucleotides
CA265_RS02790: CA265_RS02790 - hypothetical protein, at 701,720 to 703,315
_RS02790
CA265_RS02795: CA265_RS02795 - hypothetical protein, at 703,656 to 703,961
_RS02795
CA265_RS02800: CA265_RS02800 - hypothetical protein, at 704,260 to 704,535
_RS02800
CA265_RS02805: CA265_RS02805 - hypothetical protein, at 704,651 to 705,805
_RS02805
Position (kb) 704
705 Strain fitness (log2 ratio) -1
0
1
2 at 703.297 kb on + strand at 703.310 kb on - strand at 703.327 kb on + strand at 703.328 kb on - strand at 703.330 kb on - strand at 703.353 kb on - strand at 703.390 kb on - strand at 703.411 kb on - strand at 703.436 kb on + strand at 703.439 kb on + strand at 703.440 kb on - strand at 703.452 kb on + strand at 703.452 kb on + strand at 703.456 kb on - strand at 703.520 kb on - strand at 703.545 kb on + strand at 703.582 kb on - strand at 703.754 kb on + strand, within CA265_RS02795 at 703.755 kb on - strand, within CA265_RS02795 at 703.755 kb on - strand, within CA265_RS02795 at 703.767 kb on - strand, within CA265_RS02795 at 703.950 kb on - strand at 703.950 kb on - strand at 704.016 kb on + strand at 704.027 kb on + strand at 704.087 kb on - strand at 704.087 kb on - strand at 704.153 kb on - strand at 704.166 kb on - strand at 704.299 kb on + strand, within CA265_RS02800 at 704.300 kb on - strand, within CA265_RS02800 at 704.300 kb on - strand, within CA265_RS02800 at 704.304 kb on + strand, within CA265_RS02800 at 704.324 kb on + strand, within CA265_RS02800 at 704.325 kb on - strand, within CA265_RS02800 at 704.333 kb on - strand, within CA265_RS02800 at 704.355 kb on - strand, within CA265_RS02800 at 704.361 kb on + strand, within CA265_RS02800 at 704.362 kb on - strand, within CA265_RS02800 at 704.452 kb on - strand, within CA265_RS02800 at 704.460 kb on + strand, within CA265_RS02800 at 704.519 kb on + strand at 704.520 kb on - strand at 704.535 kb on + strand at 704.536 kb on - strand at 704.562 kb on - strand at 704.564 kb on - strand at 704.583 kb on - strand at 704.635 kb on - strand at 704.676 kb on + strand at 704.780 kb on - strand, within CA265_RS02805 at 704.780 kb on - strand, within CA265_RS02805 at 704.781 kb on + strand, within CA265_RS02805 at 704.782 kb on - strand, within CA265_RS02805 at 704.837 kb on - strand, within CA265_RS02805 at 704.842 kb on - strand, within CA265_RS02805 at 704.867 kb on - strand, within CA265_RS02805 at 704.868 kb on + strand, within CA265_RS02805 at 704.870 kb on + strand, within CA265_RS02805 at 704.922 kb on + strand, within CA265_RS02805 at 704.993 kb on + strand, within CA265_RS02805 at 705.091 kb on - strand, within CA265_RS02805 at 705.120 kb on + strand, within CA265_RS02805 at 705.135 kb on - strand, within CA265_RS02805 at 705.165 kb on - strand, within CA265_RS02805 at 705.188 kb on - strand, within CA265_RS02805 at 705.188 kb on - strand, within CA265_RS02805 at 705.210 kb on + strand, within CA265_RS02805 at 705.275 kb on - strand, within CA265_RS02805 at 705.277 kb on - strand, within CA265_RS02805 at 705.385 kb on + strand, within CA265_RS02805 at 705.409 kb on + strand, within CA265_RS02805 at 705.409 kb on + strand, within CA265_RS02805 at 705.511 kb on - strand, within CA265_RS02805 at 705.511 kb on - strand, within CA265_RS02805 at 705.512 kb on + strand, within CA265_RS02805 at 705.517 kb on + strand, within CA265_RS02805 at 705.518 kb on - strand, within CA265_RS02805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 703,297 + -1.4 703,310 - -0.7 703,327 + +0.1 703,328 - +0.5 703,330 - +0.5 703,353 - +0.1 703,390 - +0.4 703,411 - +1.1 703,436 + +0.0 703,439 + +0.9 703,440 - -0.9 703,452 + -0.2 703,452 + -1.1 703,456 - +0.8 703,520 - +2.1 703,545 + -1.2 703,582 - -0.4 703,754 + CA265_RS02795 0.32 +0.9 703,755 - CA265_RS02795 0.32 +0.1 703,755 - CA265_RS02795 0.32 -1.2 703,767 - CA265_RS02795 0.36 +0.4 703,950 - -0.6 703,950 - +0.2 704,016 + +0.1 704,027 + -0.6 704,087 - -0.3 704,087 - +0.6 704,153 - +0.4 704,166 - -1.5 704,299 + CA265_RS02800 0.14 +0.2 704,300 - CA265_RS02800 0.14 -0.2 704,300 - CA265_RS02800 0.14 +0.1 704,304 + CA265_RS02800 0.16 +1.0 704,324 + CA265_RS02800 0.23 +0.8 704,325 - CA265_RS02800 0.24 -0.2 704,333 - CA265_RS02800 0.26 +0.1 704,355 - CA265_RS02800 0.34 +0.7 704,361 + CA265_RS02800 0.37 +0.4 704,362 - CA265_RS02800 0.37 +0.4 704,452 - CA265_RS02800 0.70 -0.2 704,460 + CA265_RS02800 0.72 -0.5 704,519 + -0.0 704,520 - +1.6 704,535 + +0.2 704,536 - +0.2 704,562 - -1.0 704,564 - +0.5 704,583 - +0.2 704,635 - -0.0 704,676 + -0.9 704,780 - CA265_RS02805 0.11 +0.4 704,780 - CA265_RS02805 0.11 +0.2 704,781 + CA265_RS02805 0.11 +0.3 704,782 - CA265_RS02805 0.11 +0.3 704,837 - CA265_RS02805 0.16 +0.1 704,842 - CA265_RS02805 0.17 +0.4 704,867 - CA265_RS02805 0.19 +0.8 704,868 + CA265_RS02805 0.19 +0.2 704,870 + CA265_RS02805 0.19 +0.9 704,922 + CA265_RS02805 0.23 +0.0 704,993 + CA265_RS02805 0.30 +0.0 705,091 - CA265_RS02805 0.38 -0.3 705,120 + CA265_RS02805 0.41 -0.1 705,135 - CA265_RS02805 0.42 -0.9 705,165 - CA265_RS02805 0.45 -0.7 705,188 - CA265_RS02805 0.46 +0.2 705,188 - CA265_RS02805 0.46 -0.0 705,210 + CA265_RS02805 0.48 +0.7 705,275 - CA265_RS02805 0.54 -0.2 705,277 - CA265_RS02805 0.54 -0.2 705,385 + CA265_RS02805 0.64 +1.0 705,409 + CA265_RS02805 0.66 -0.7 705,409 + CA265_RS02805 0.66 -0.3 705,511 - CA265_RS02805 0.74 +0.0 705,511 - CA265_RS02805 0.74 -0.1 705,512 + CA265_RS02805 0.75 -0.7 705,517 + CA265_RS02805 0.75 +0.1 705,518 - CA265_RS02805 0.75 -1.2
Or see this region's nucleotide sequence