Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02315

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02305 and CA265_RS02310 are separated by 359 nucleotidesCA265_RS02310 and CA265_RS02315 are separated by 239 nucleotidesCA265_RS02315 and CA265_RS02320 are separated by 52 nucleotides CA265_RS02305: CA265_RS02305 - hypothetical protein, at 574,893 to 575,429 _RS02305 CA265_RS02310: CA265_RS02310 - hypothetical protein, at 575,789 to 576,154 _RS02310 CA265_RS02315: CA265_RS02315 - single-stranded DNA-binding protein, at 576,394 to 576,741 _RS02315 CA265_RS02320: CA265_RS02320 - TonB-dependent receptor, at 576,794 to 578,845 _RS02320 Position (kb) 576 577Strain fitness (log2 ratio) -2 -1 0 1at 575.440 kb on - strandat 575.503 kb on + strandat 575.504 kb on - strandat 575.582 kb on - strandat 575.582 kb on - strandat 575.655 kb on + strandat 575.656 kb on - strandat 575.722 kb on - strandat 575.770 kb on + strandat 575.771 kb on - strandat 575.829 kb on + strand, within CA265_RS02310at 575.829 kb on + strand, within CA265_RS02310at 575.830 kb on - strand, within CA265_RS02310at 575.830 kb on - strand, within CA265_RS02310at 575.830 kb on - strand, within CA265_RS02310at 575.860 kb on - strand, within CA265_RS02310at 575.877 kb on + strand, within CA265_RS02310at 575.905 kb on + strand, within CA265_RS02310at 575.906 kb on - strand, within CA265_RS02310at 575.907 kb on + strand, within CA265_RS02310at 575.907 kb on + strand, within CA265_RS02310at 575.907 kb on + strand, within CA265_RS02310at 575.908 kb on - strand, within CA265_RS02310at 575.908 kb on - strand, within CA265_RS02310at 575.911 kb on + strand, within CA265_RS02310at 576.015 kb on - strand, within CA265_RS02310at 576.020 kb on - strand, within CA265_RS02310at 576.144 kb on - strandat 576.144 kb on - strandat 576.158 kb on - strandat 576.244 kb on + strandat 576.285 kb on + strandat 576.285 kb on + strandat 576.420 kb on - strandat 576.453 kb on - strand, within CA265_RS02315at 576.624 kb on - strand, within CA265_RS02315at 576.705 kb on - strand, within CA265_RS02315at 576.705 kb on - strand, within CA265_RS02315at 576.705 kb on - strand, within CA265_RS02315at 576.806 kb on - strandat 576.940 kb on + strandat 576.940 kb on + strandat 576.945 kb on - strandat 576.950 kb on + strandat 576.986 kb on + strandat 576.987 kb on + strandat 577.037 kb on - strand, within CA265_RS02320at 577.037 kb on - strand, within CA265_RS02320at 577.038 kb on + strand, within CA265_RS02320at 577.038 kb on + strand, within CA265_RS02320at 577.039 kb on - strand, within CA265_RS02320at 577.189 kb on - strand, within CA265_RS02320at 577.205 kb on + strand, within CA265_RS02320at 577.245 kb on - strand, within CA265_RS02320at 577.262 kb on + strand, within CA265_RS02320at 577.300 kb on - strand, within CA265_RS02320at 577.328 kb on + strand, within CA265_RS02320at 577.328 kb on + strand, within CA265_RS02320at 577.329 kb on - strand, within CA265_RS02320at 577.351 kb on - strand, within CA265_RS02320at 577.359 kb on - strand, within CA265_RS02320at 577.404 kb on - strand, within CA265_RS02320at 577.416 kb on + strand, within CA265_RS02320at 577.448 kb on - strand, within CA265_RS02320at 577.460 kb on - strand, within CA265_RS02320at 577.483 kb on + strand, within CA265_RS02320at 577.486 kb on + strand, within CA265_RS02320at 577.486 kb on + strand, within CA265_RS02320at 577.497 kb on + strand, within CA265_RS02320at 577.504 kb on + strand, within CA265_RS02320at 577.504 kb on + strand, within CA265_RS02320at 577.505 kb on - strand, within CA265_RS02320at 577.542 kb on - strand, within CA265_RS02320at 577.705 kb on - strand, within CA265_RS02320

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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575,440 - -0.4
575,503 + +0.3
575,504 - -0.3
575,582 - +0.2
575,582 - -0.7
575,655 + -0.0
575,656 - -0.6
575,722 - -0.1
575,770 + -0.1
575,771 - -0.1
575,829 + CA265_RS02310 0.11 +0.1
575,829 + CA265_RS02310 0.11 -0.3
575,830 - CA265_RS02310 0.11 +0.7
575,830 - CA265_RS02310 0.11 -0.4
575,830 - CA265_RS02310 0.11 -0.2
575,860 - CA265_RS02310 0.19 -0.4
575,877 + CA265_RS02310 0.24 -0.5
575,905 + CA265_RS02310 0.32 +0.4
575,906 - CA265_RS02310 0.32 -0.1
575,907 + CA265_RS02310 0.32 -0.7
575,907 + CA265_RS02310 0.32 +0.1
575,907 + CA265_RS02310 0.32 +0.1
575,908 - CA265_RS02310 0.33 -0.8
575,908 - CA265_RS02310 0.33 -0.7
575,911 + CA265_RS02310 0.33 +0.2
576,015 - CA265_RS02310 0.62 +0.6
576,020 - CA265_RS02310 0.63 -0.7
576,144 - +0.7
576,144 - +0.3
576,158 - -1.2
576,244 + -0.0
576,285 + -0.1
576,285 + -1.5
576,420 - +0.3
576,453 - CA265_RS02315 0.17 -0.1
576,624 - CA265_RS02315 0.66 +0.9
576,705 - CA265_RS02315 0.89 +0.1
576,705 - CA265_RS02315 0.89 -1.4
576,705 - CA265_RS02315 0.89 +0.7
576,806 - +0.2
576,940 + +0.1
576,940 + -0.7
576,945 - +0.5
576,950 + -0.5
576,986 + -0.7
576,987 + +0.3
577,037 - CA265_RS02320 0.12 -0.1
577,037 - CA265_RS02320 0.12 +0.1
577,038 + CA265_RS02320 0.12 +0.5
577,038 + CA265_RS02320 0.12 +0.2
577,039 - CA265_RS02320 0.12 -0.9
577,189 - CA265_RS02320 0.19 -0.6
577,205 + CA265_RS02320 0.20 -1.2
577,245 - CA265_RS02320 0.22 -0.3
577,262 + CA265_RS02320 0.23 -0.5
577,300 - CA265_RS02320 0.25 -0.7
577,328 + CA265_RS02320 0.26 -0.2
577,328 + CA265_RS02320 0.26 -0.8
577,329 - CA265_RS02320 0.26 +0.1
577,351 - CA265_RS02320 0.27 -0.2
577,359 - CA265_RS02320 0.28 +0.3
577,404 - CA265_RS02320 0.30 -1.4
577,416 + CA265_RS02320 0.30 -0.2
577,448 - CA265_RS02320 0.32 +0.6
577,460 - CA265_RS02320 0.32 +0.2
577,483 + CA265_RS02320 0.34 +0.4
577,486 + CA265_RS02320 0.34 +0.1
577,486 + CA265_RS02320 0.34 -0.4
577,497 + CA265_RS02320 0.34 -1.4
577,504 + CA265_RS02320 0.35 -2.1
577,504 + CA265_RS02320 0.35 -0.2
577,505 - CA265_RS02320 0.35 -0.4
577,542 - CA265_RS02320 0.36 +0.4
577,705 - CA265_RS02320 0.44 +0.5

Or see this region's nucleotide sequence