Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02265

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS02255 and CA265_RS02260 are separated by 38 nucleotidesCA265_RS02260 and CA265_RS02265 are separated by 46 nucleotidesCA265_RS02265 and CA265_RS02270 are separated by 102 nucleotidesCA265_RS02270 and CA265_RS02275 are separated by 203 nucleotides CA265_RS02255: CA265_RS02255 - hypothetical protein, at 568,389 to 568,820 _RS02255 CA265_RS02260: CA265_RS02260 - GNAT family N-acetyltransferase, at 568,859 to 569,389 _RS02260 CA265_RS02265: CA265_RS02265 - damage-inducible protein DinB, at 569,436 to 569,936 _RS02265 CA265_RS02270: CA265_RS02270 - DUF4199 domain-containing protein, at 570,039 to 570,587 _RS02270 CA265_RS02275: CA265_RS02275 - helix-turn-helix transcriptional regulator, at 570,791 to 571,261 _RS02275 Position (kb) 569 570Strain fitness (log2 ratio) -2 -1 0 1 2at 568.438 kb on + strand, within CA265_RS02255at 568.439 kb on - strand, within CA265_RS02255at 568.440 kb on + strand, within CA265_RS02255at 568.446 kb on - strand, within CA265_RS02255at 568.562 kb on + strand, within CA265_RS02255at 568.566 kb on - strand, within CA265_RS02255at 568.598 kb on + strand, within CA265_RS02255at 568.599 kb on - strand, within CA265_RS02255at 568.681 kb on - strand, within CA265_RS02255at 568.775 kb on + strand, within CA265_RS02255at 568.775 kb on + strand, within CA265_RS02255at 568.776 kb on - strand, within CA265_RS02255at 568.776 kb on - strand, within CA265_RS02255at 568.787 kb on + strandat 568.788 kb on - strandat 568.791 kb on - strandat 568.836 kb on - strandat 568.911 kb on + strandat 568.911 kb on + strandat 568.988 kb on - strand, within CA265_RS02260at 569.001 kb on + strand, within CA265_RS02260at 569.054 kb on - strand, within CA265_RS02260at 569.106 kb on + strand, within CA265_RS02260at 569.106 kb on + strand, within CA265_RS02260at 569.120 kb on - strand, within CA265_RS02260at 569.167 kb on + strand, within CA265_RS02260at 569.168 kb on - strand, within CA265_RS02260at 569.248 kb on + strand, within CA265_RS02260at 569.260 kb on + strand, within CA265_RS02260at 569.287 kb on - strand, within CA265_RS02260at 569.406 kb on - strandat 569.467 kb on + strandat 569.468 kb on - strandat 569.469 kb on + strandat 569.469 kb on + strandat 569.469 kb on + strandat 569.469 kb on + strandat 569.470 kb on - strandat 569.471 kb on + strandat 569.472 kb on - strandat 569.504 kb on - strand, within CA265_RS02265at 569.544 kb on + strand, within CA265_RS02265at 569.545 kb on - strand, within CA265_RS02265at 569.693 kb on + strand, within CA265_RS02265at 569.734 kb on + strand, within CA265_RS02265at 569.785 kb on + strand, within CA265_RS02265at 569.820 kb on - strand, within CA265_RS02265at 569.851 kb on - strand, within CA265_RS02265at 569.874 kb on + strand, within CA265_RS02265at 569.896 kb on - strandat 569.917 kb on - strandat 569.927 kb on + strandat 569.931 kb on + strandat 569.973 kb on - strandat 569.983 kb on + strandat 569.988 kb on + strandat 570.023 kb on - strandat 570.023 kb on - strandat 570.120 kb on - strand, within CA265_RS02270at 570.271 kb on + strand, within CA265_RS02270at 570.271 kb on + strand, within CA265_RS02270at 570.271 kb on + strand, within CA265_RS02270at 570.272 kb on - strand, within CA265_RS02270at 570.272 kb on - strand, within CA265_RS02270at 570.272 kb on - strand, within CA265_RS02270at 570.272 kb on - strand, within CA265_RS02270at 570.297 kb on + strand, within CA265_RS02270at 570.298 kb on - strand, within CA265_RS02270at 570.298 kb on - strand, within CA265_RS02270at 570.301 kb on + strand, within CA265_RS02270at 570.355 kb on + strand, within CA265_RS02270at 570.356 kb on - strand, within CA265_RS02270at 570.404 kb on - strand, within CA265_RS02270at 570.407 kb on + strand, within CA265_RS02270at 570.408 kb on - strand, within CA265_RS02270at 570.459 kb on - strand, within CA265_RS02270at 570.459 kb on - strand, within CA265_RS02270at 570.505 kb on + strand, within CA265_RS02270at 570.574 kb on - strandat 570.596 kb on - strandat 570.596 kb on - strandat 570.614 kb on - strandat 570.614 kb on - strandat 570.623 kb on - strandat 570.634 kb on + strandat 570.635 kb on - strandat 570.683 kb on + strandat 570.735 kb on + strandat 570.736 kb on - strandat 570.889 kb on + strand, within CA265_RS02275at 570.905 kb on + strand, within CA265_RS02275at 570.911 kb on + strand, within CA265_RS02275at 570.912 kb on - strand, within CA265_RS02275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
568,438 + CA265_RS02255 0.11 -0.3
568,439 - CA265_RS02255 0.12 -0.1
568,440 + CA265_RS02255 0.12 -0.1
568,446 - CA265_RS02255 0.13 -0.1
568,562 + CA265_RS02255 0.40 -0.7
568,566 - CA265_RS02255 0.41 -0.1
568,598 + CA265_RS02255 0.48 +1.3
568,599 - CA265_RS02255 0.49 -1.4
568,681 - CA265_RS02255 0.68 +0.9
568,775 + CA265_RS02255 0.89 +0.4
568,775 + CA265_RS02255 0.89 -0.4
568,776 - CA265_RS02255 0.90 -0.7
568,776 - CA265_RS02255 0.90 -0.4
568,787 + -0.3
568,788 - -0.5
568,791 - -0.1
568,836 - +0.2
568,911 + +0.0
568,911 + -0.1
568,988 - CA265_RS02260 0.24 +0.9
569,001 + CA265_RS02260 0.27 +0.6
569,054 - CA265_RS02260 0.37 +1.0
569,106 + CA265_RS02260 0.47 -0.4
569,106 + CA265_RS02260 0.47 -2.3
569,120 - CA265_RS02260 0.49 -2.1
569,167 + CA265_RS02260 0.58 +0.3
569,168 - CA265_RS02260 0.58 -0.8
569,248 + CA265_RS02260 0.73 +0.1
569,260 + CA265_RS02260 0.76 -0.2
569,287 - CA265_RS02260 0.81 -0.9
569,406 - -0.5
569,467 + -0.1
569,468 - +0.5
569,469 + -0.1
569,469 + -0.4
569,469 + -0.2
569,469 + -0.7
569,470 - +0.0
569,471 + +0.4
569,472 - -0.5
569,504 - CA265_RS02265 0.14 +0.1
569,544 + CA265_RS02265 0.22 +0.1
569,545 - CA265_RS02265 0.22 +0.9
569,693 + CA265_RS02265 0.51 +0.4
569,734 + CA265_RS02265 0.59 -0.4
569,785 + CA265_RS02265 0.70 -0.1
569,820 - CA265_RS02265 0.77 +0.7
569,851 - CA265_RS02265 0.83 +0.2
569,874 + CA265_RS02265 0.87 -0.0
569,896 - +2.6
569,917 - -2.1
569,927 + -0.2
569,931 + -0.4
569,973 - +0.1
569,983 + -0.4
569,988 + +0.2
570,023 - -0.3
570,023 - +0.3
570,120 - CA265_RS02270 0.15 +0.3
570,271 + CA265_RS02270 0.42 +0.2
570,271 + CA265_RS02270 0.42 -0.2
570,271 + CA265_RS02270 0.42 -0.2
570,272 - CA265_RS02270 0.42 +0.2
570,272 - CA265_RS02270 0.42 +0.6
570,272 - CA265_RS02270 0.42 +0.6
570,272 - CA265_RS02270 0.42 +0.8
570,297 + CA265_RS02270 0.47 +0.0
570,298 - CA265_RS02270 0.47 +0.2
570,298 - CA265_RS02270 0.47 -0.6
570,301 + CA265_RS02270 0.48 +0.1
570,355 + CA265_RS02270 0.58 +0.1
570,356 - CA265_RS02270 0.58 +1.3
570,404 - CA265_RS02270 0.66 -0.7
570,407 + CA265_RS02270 0.67 +0.0
570,408 - CA265_RS02270 0.67 -0.2
570,459 - CA265_RS02270 0.77 -0.6
570,459 - CA265_RS02270 0.77 -0.1
570,505 + CA265_RS02270 0.85 -1.2
570,574 - +0.1
570,596 - +0.5
570,596 - -0.4
570,614 - -0.4
570,614 - +0.4
570,623 - -0.7
570,634 + -0.2
570,635 - +0.4
570,683 + +0.3
570,735 + +0.8
570,736 - +0.5
570,889 + CA265_RS02275 0.21 -0.4
570,905 + CA265_RS02275 0.24 -0.2
570,911 + CA265_RS02275 0.25 +0.0
570,912 - CA265_RS02275 0.26 +0.1

Or see this region's nucleotide sequence