Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01790

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01780 and CA265_RS01785 overlap by 11 nucleotidesCA265_RS01785 and CA265_RS01790 are separated by 3 nucleotidesCA265_RS01790 and CA265_RS01795 overlap by 14 nucleotides CA265_RS01780: CA265_RS01780 - hypothetical protein, at 446,319 to 447,179 _RS01780 CA265_RS01785: CA265_RS01785 - hypothetical protein, at 447,169 to 447,939 _RS01785 CA265_RS01790: CA265_RS01790 - hypothetical protein, at 447,943 to 448,557 _RS01790 CA265_RS01795: CA265_RS01795 - ABC transporter, at 448,544 to 449,821 _RS01795 Position (kb) 447 448 449Strain fitness (log2 ratio) -1 0 1 2 3at 446.946 kb on + strand, within CA265_RS01780at 446.958 kb on - strand, within CA265_RS01780at 446.993 kb on - strand, within CA265_RS01780at 446.993 kb on - strand, within CA265_RS01780at 447.049 kb on + strand, within CA265_RS01780at 447.049 kb on + strand, within CA265_RS01780at 447.071 kb on + strand, within CA265_RS01780at 447.071 kb on + strand, within CA265_RS01780at 447.074 kb on - strand, within CA265_RS01780at 447.257 kb on + strand, within CA265_RS01785at 447.257 kb on + strand, within CA265_RS01785at 447.257 kb on + strand, within CA265_RS01785at 447.257 kb on + strand, within CA265_RS01785at 447.299 kb on - strand, within CA265_RS01785at 447.324 kb on - strand, within CA265_RS01785at 447.324 kb on - strand, within CA265_RS01785at 447.324 kb on - strand, within CA265_RS01785at 447.351 kb on + strand, within CA265_RS01785at 447.363 kb on - strand, within CA265_RS01785at 447.524 kb on + strand, within CA265_RS01785at 447.715 kb on - strand, within CA265_RS01785at 447.744 kb on - strand, within CA265_RS01785at 447.774 kb on + strand, within CA265_RS01785at 447.809 kb on - strand, within CA265_RS01785at 447.819 kb on + strand, within CA265_RS01785at 447.899 kb on + strandat 447.910 kb on - strandat 447.913 kb on + strandat 447.913 kb on + strandat 447.913 kb on + strandat 447.913 kb on + strandat 447.914 kb on - strandat 447.918 kb on - strandat 447.918 kb on - strandat 447.988 kb on + strandat 447.989 kb on - strandat 447.993 kb on - strandat 447.994 kb on + strandat 447.994 kb on + strandat 447.994 kb on + strandat 447.995 kb on - strandat 448.015 kb on - strand, within CA265_RS01790at 448.101 kb on + strand, within CA265_RS01790at 448.101 kb on + strand, within CA265_RS01790at 448.116 kb on + strand, within CA265_RS01790at 448.123 kb on - strand, within CA265_RS01790at 448.123 kb on - strand, within CA265_RS01790at 448.243 kb on + strand, within CA265_RS01790at 448.243 kb on + strand, within CA265_RS01790at 448.243 kb on + strand, within CA265_RS01790at 448.243 kb on + strand, within CA265_RS01790at 448.243 kb on + strand, within CA265_RS01790at 448.244 kb on - strand, within CA265_RS01790at 448.297 kb on + strand, within CA265_RS01790at 448.348 kb on + strand, within CA265_RS01790at 448.435 kb on - strand, within CA265_RS01790at 448.452 kb on + strand, within CA265_RS01790at 448.469 kb on + strand, within CA265_RS01790at 448.481 kb on - strand, within CA265_RS01790at 448.569 kb on - strandat 448.613 kb on + strandat 448.614 kb on - strandat 448.618 kb on - strandat 448.633 kb on + strandat 448.651 kb on + strandat 448.651 kb on + strandat 448.704 kb on - strandat 448.705 kb on + strand, within CA265_RS01795at 448.709 kb on + strand, within CA265_RS01795at 448.807 kb on + strand, within CA265_RS01795at 448.826 kb on + strand, within CA265_RS01795at 448.826 kb on + strand, within CA265_RS01795at 448.853 kb on + strand, within CA265_RS01795at 448.858 kb on + strand, within CA265_RS01795at 448.922 kb on - strand, within CA265_RS01795at 448.922 kb on - strand, within CA265_RS01795at 448.925 kb on + strand, within CA265_RS01795at 448.925 kb on + strand, within CA265_RS01795at 448.929 kb on + strand, within CA265_RS01795at 448.929 kb on + strand, within CA265_RS01795at 448.930 kb on - strand, within CA265_RS01795at 448.941 kb on - strand, within CA265_RS01795at 448.988 kb on - strand, within CA265_RS01795at 449.004 kb on - strand, within CA265_RS01795at 449.035 kb on + strand, within CA265_RS01795at 449.194 kb on + strand, within CA265_RS01795at 449.252 kb on + strand, within CA265_RS01795at 449.255 kb on + strand, within CA265_RS01795at 449.431 kb on + strand, within CA265_RS01795at 449.467 kb on + strand, within CA265_RS01795at 449.468 kb on - strand, within CA265_RS01795at 449.481 kb on - strand, within CA265_RS01795at 449.544 kb on - strand, within CA265_RS01795

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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446,946 + CA265_RS01780 0.73 -0.4
446,958 - CA265_RS01780 0.74 -0.6
446,993 - CA265_RS01780 0.78 +0.6
446,993 - CA265_RS01780 0.78 +0.2
447,049 + CA265_RS01780 0.85 +0.6
447,049 + CA265_RS01780 0.85 -1.1
447,071 + CA265_RS01780 0.87 -0.7
447,071 + CA265_RS01780 0.87 -0.1
447,074 - CA265_RS01780 0.88 +3.0
447,257 + CA265_RS01785 0.11 -0.4
447,257 + CA265_RS01785 0.11 +0.9
447,257 + CA265_RS01785 0.11 -0.6
447,257 + CA265_RS01785 0.11 +0.5
447,299 - CA265_RS01785 0.17 -0.1
447,324 - CA265_RS01785 0.20 +1.1
447,324 - CA265_RS01785 0.20 -0.4
447,324 - CA265_RS01785 0.20 -0.1
447,351 + CA265_RS01785 0.24 -0.5
447,363 - CA265_RS01785 0.25 -0.9
447,524 + CA265_RS01785 0.46 +0.1
447,715 - CA265_RS01785 0.71 -0.2
447,744 - CA265_RS01785 0.75 -0.0
447,774 + CA265_RS01785 0.78 -0.5
447,809 - CA265_RS01785 0.83 -0.2
447,819 + CA265_RS01785 0.84 -0.1
447,899 + +0.6
447,910 - +0.0
447,913 + +0.2
447,913 + +0.1
447,913 + +0.1
447,913 + -1.0
447,914 - -0.1
447,918 - +1.1
447,918 - -0.7
447,988 + -0.7
447,989 - +0.3
447,993 - -1.4
447,994 + +1.0
447,994 + -0.0
447,994 + -0.3
447,995 - -0.8
448,015 - CA265_RS01790 0.12 +0.8
448,101 + CA265_RS01790 0.26 +0.6
448,101 + CA265_RS01790 0.26 -0.5
448,116 + CA265_RS01790 0.28 -0.2
448,123 - CA265_RS01790 0.29 +0.3
448,123 - CA265_RS01790 0.29 +1.0
448,243 + CA265_RS01790 0.49 +0.7
448,243 + CA265_RS01790 0.49 -0.1
448,243 + CA265_RS01790 0.49 +0.2
448,243 + CA265_RS01790 0.49 -0.1
448,243 + CA265_RS01790 0.49 +0.8
448,244 - CA265_RS01790 0.49 -0.5
448,297 + CA265_RS01790 0.58 +0.2
448,348 + CA265_RS01790 0.66 -0.0
448,435 - CA265_RS01790 0.80 +0.5
448,452 + CA265_RS01790 0.83 +0.3
448,469 + CA265_RS01790 0.86 +0.1
448,481 - CA265_RS01790 0.87 -0.4
448,569 - -0.9
448,613 + -0.2
448,614 - -0.3
448,618 - -0.7
448,633 + -0.1
448,651 + -0.5
448,651 + -0.1
448,704 - +2.7
448,705 + CA265_RS01795 0.13 +0.4
448,709 + CA265_RS01795 0.13 +0.3
448,807 + CA265_RS01795 0.21 -1.0
448,826 + CA265_RS01795 0.22 -0.0
448,826 + CA265_RS01795 0.22 +0.1
448,853 + CA265_RS01795 0.24 +0.4
448,858 + CA265_RS01795 0.25 -0.1
448,922 - CA265_RS01795 0.30 -0.1
448,922 - CA265_RS01795 0.30 -0.5
448,925 + CA265_RS01795 0.30 -0.1
448,925 + CA265_RS01795 0.30 -0.6
448,929 + CA265_RS01795 0.30 -0.1
448,929 + CA265_RS01795 0.30 -0.2
448,930 - CA265_RS01795 0.30 +0.3
448,941 - CA265_RS01795 0.31 -0.4
448,988 - CA265_RS01795 0.35 +0.4
449,004 - CA265_RS01795 0.36 -1.1
449,035 + CA265_RS01795 0.38 -0.2
449,194 + CA265_RS01795 0.51 -0.5
449,252 + CA265_RS01795 0.55 +0.7
449,255 + CA265_RS01795 0.56 -0.3
449,431 + CA265_RS01795 0.69 +0.2
449,467 + CA265_RS01795 0.72 -0.4
449,468 - CA265_RS01795 0.72 +0.2
449,481 - CA265_RS01795 0.73 +0.8
449,544 - CA265_RS01795 0.78 -0.1

Or see this region's nucleotide sequence