Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01455 and CA265_RS01460 are separated by 54 nucleotides CA265_RS01460 and CA265_RS01465 are separated by 338 nucleotides CA265_RS01465 and CA265_RS01470 are separated by 262 nucleotides
CA265_RS01455: CA265_RS01455 - MFS transporter, at 371,177 to 372,418
_RS01455
CA265_RS01460: CA265_RS01460 - hypothetical protein, at 372,473 to 372,841
_RS01460
CA265_RS01465: CA265_RS01465 - hypothetical protein, at 373,180 to 373,386
_RS01465
CA265_RS01470: CA265_RS01470 - tRNA-Ser, at 373,649 to 373,736
_RS01470
Position (kb) 372
373 Strain fitness (log2 ratio) -1
0
1
2 at 371.507 kb on + strand, within CA265_RS01455 at 371.508 kb on - strand, within CA265_RS01455 at 371.508 kb on - strand, within CA265_RS01455 at 371.566 kb on + strand, within CA265_RS01455 at 371.566 kb on + strand, within CA265_RS01455 at 371.606 kb on - strand, within CA265_RS01455 at 371.606 kb on - strand, within CA265_RS01455 at 371.719 kb on - strand, within CA265_RS01455 at 371.770 kb on + strand, within CA265_RS01455 at 371.824 kb on + strand, within CA265_RS01455 at 371.825 kb on - strand, within CA265_RS01455 at 371.825 kb on - strand, within CA265_RS01455 at 371.835 kb on + strand, within CA265_RS01455 at 371.848 kb on + strand, within CA265_RS01455 at 371.854 kb on + strand, within CA265_RS01455 at 371.928 kb on + strand, within CA265_RS01455 at 371.933 kb on - strand, within CA265_RS01455 at 371.985 kb on + strand, within CA265_RS01455 at 371.985 kb on + strand, within CA265_RS01455 at 372.013 kb on - strand, within CA265_RS01455 at 372.021 kb on - strand, within CA265_RS01455 at 372.023 kb on + strand, within CA265_RS01455 at 372.049 kb on - strand, within CA265_RS01455 at 372.052 kb on + strand, within CA265_RS01455 at 372.053 kb on - strand, within CA265_RS01455 at 372.053 kb on - strand, within CA265_RS01455 at 372.085 kb on - strand, within CA265_RS01455 at 372.085 kb on - strand, within CA265_RS01455 at 372.085 kb on - strand, within CA265_RS01455 at 372.125 kb on + strand, within CA265_RS01455 at 372.125 kb on + strand, within CA265_RS01455 at 372.144 kb on + strand, within CA265_RS01455 at 372.241 kb on + strand, within CA265_RS01455 at 372.246 kb on + strand, within CA265_RS01455 at 372.264 kb on + strand, within CA265_RS01455 at 372.278 kb on + strand, within CA265_RS01455 at 372.300 kb on + strand at 372.322 kb on + strand at 372.323 kb on - strand at 372.427 kb on - strand at 372.552 kb on + strand, within CA265_RS01460 at 372.568 kb on + strand, within CA265_RS01460 at 372.609 kb on + strand, within CA265_RS01460 at 372.651 kb on - strand, within CA265_RS01460 at 372.679 kb on + strand, within CA265_RS01460 at 372.734 kb on + strand, within CA265_RS01460 at 372.735 kb on - strand, within CA265_RS01460 at 372.735 kb on - strand, within CA265_RS01460 at 372.742 kb on - strand, within CA265_RS01460 at 372.742 kb on - strand, within CA265_RS01460 at 372.742 kb on - strand, within CA265_RS01460 at 372.742 kb on - strand, within CA265_RS01460 at 372.779 kb on - strand, within CA265_RS01460 at 372.881 kb on - strand at 372.916 kb on - strand at 372.941 kb on + strand at 372.942 kb on - strand at 372.943 kb on + strand at 372.965 kb on + strand at 372.966 kb on - strand at 372.969 kb on - strand at 372.985 kb on - strand at 373.026 kb on - strand at 373.027 kb on + strand at 373.127 kb on - strand at 373.130 kb on + strand at 373.206 kb on + strand, within CA265_RS01465 at 373.224 kb on + strand, within CA265_RS01465 at 373.225 kb on - strand, within CA265_RS01465 at 373.225 kb on - strand, within CA265_RS01465 at 373.244 kb on + strand, within CA265_RS01465 at 373.246 kb on + strand, within CA265_RS01465 at 373.248 kb on + strand, within CA265_RS01465 at 373.248 kb on + strand, within CA265_RS01465 at 373.322 kb on - strand, within CA265_RS01465 at 373.322 kb on - strand, within CA265_RS01465 at 373.336 kb on - strand, within CA265_RS01465 at 373.420 kb on + strand at 373.421 kb on - strand at 373.440 kb on + strand at 373.445 kb on + strand at 373.445 kb on + strand at 373.446 kb on - strand at 373.530 kb on + strand at 373.531 kb on - strand at 373.531 kb on - strand at 373.588 kb on - strand at 373.588 kb on - strand at 373.597 kb on + strand at 373.623 kb on - strand at 373.623 kb on - strand at 373.623 kb on - strand at 373.623 kb on - strand at 373.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 371,507 + CA265_RS01455 0.27 -0.6 371,508 - CA265_RS01455 0.27 -0.4 371,508 - CA265_RS01455 0.27 -0.2 371,566 + CA265_RS01455 0.31 -0.3 371,566 + CA265_RS01455 0.31 +0.5 371,606 - CA265_RS01455 0.35 -0.6 371,606 - CA265_RS01455 0.35 -0.4 371,719 - CA265_RS01455 0.44 -0.8 371,770 + CA265_RS01455 0.48 +0.2 371,824 + CA265_RS01455 0.52 +0.8 371,825 - CA265_RS01455 0.52 +0.0 371,825 - CA265_RS01455 0.52 -0.3 371,835 + CA265_RS01455 0.53 -0.5 371,848 + CA265_RS01455 0.54 +0.2 371,854 + CA265_RS01455 0.55 -0.7 371,928 + CA265_RS01455 0.60 -0.8 371,933 - CA265_RS01455 0.61 +0.0 371,985 + CA265_RS01455 0.65 -1.1 371,985 + CA265_RS01455 0.65 -1.5 372,013 - CA265_RS01455 0.67 +0.5 372,021 - CA265_RS01455 0.68 +1.4 372,023 + CA265_RS01455 0.68 -0.2 372,049 - CA265_RS01455 0.70 -0.2 372,052 + CA265_RS01455 0.70 -0.2 372,053 - CA265_RS01455 0.71 +0.1 372,053 - CA265_RS01455 0.71 -0.1 372,085 - CA265_RS01455 0.73 -0.6 372,085 - CA265_RS01455 0.73 +0.4 372,085 - CA265_RS01455 0.73 +0.5 372,125 + CA265_RS01455 0.76 +0.1 372,125 + CA265_RS01455 0.76 -0.1 372,144 + CA265_RS01455 0.78 +0.4 372,241 + CA265_RS01455 0.86 +0.6 372,246 + CA265_RS01455 0.86 -0.7 372,264 + CA265_RS01455 0.88 -0.4 372,278 + CA265_RS01455 0.89 -0.1 372,300 + -0.2 372,322 + +0.4 372,323 - -0.2 372,427 - -0.7 372,552 + CA265_RS01460 0.21 -0.6 372,568 + CA265_RS01460 0.26 +0.3 372,609 + CA265_RS01460 0.37 +0.6 372,651 - CA265_RS01460 0.48 -0.0 372,679 + CA265_RS01460 0.56 -0.5 372,734 + CA265_RS01460 0.71 +0.7 372,735 - CA265_RS01460 0.71 +0.4 372,735 - CA265_RS01460 0.71 -0.2 372,742 - CA265_RS01460 0.73 +0.1 372,742 - CA265_RS01460 0.73 +0.7 372,742 - CA265_RS01460 0.73 -0.5 372,742 - CA265_RS01460 0.73 +0.8 372,779 - CA265_RS01460 0.83 -0.1 372,881 - +0.5 372,916 - -0.3 372,941 + +0.3 372,942 - -0.2 372,943 + -0.0 372,965 + -1.2 372,966 - -0.3 372,969 - -0.2 372,985 - +0.6 373,026 - -0.0 373,027 + +0.2 373,127 - +2.7 373,130 + +0.2 373,206 + CA265_RS01465 0.13 -0.6 373,224 + CA265_RS01465 0.21 -0.1 373,225 - CA265_RS01465 0.22 -0.7 373,225 - CA265_RS01465 0.22 -0.4 373,244 + CA265_RS01465 0.31 +0.1 373,246 + CA265_RS01465 0.32 -0.9 373,248 + CA265_RS01465 0.33 -0.5 373,248 + CA265_RS01465 0.33 -0.6 373,322 - CA265_RS01465 0.69 +0.0 373,322 - CA265_RS01465 0.69 -1.2 373,336 - CA265_RS01465 0.75 +0.5 373,420 + -0.4 373,421 - -0.4 373,440 + +1.7 373,445 + -0.4 373,445 + -1.4 373,446 - +0.9 373,530 + -0.8 373,531 - +0.1 373,531 - -0.1 373,588 - -0.3 373,588 - -0.8 373,597 + -1.0 373,623 - +0.1 373,623 - +0.4 373,623 - +1.5 373,623 - -0.1 373,805 - +1.3
Or see this region's nucleotide sequence