Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00355 and CA265_RS00360 are separated by 206 nucleotides CA265_RS00360 and CA265_RS00365 are separated by 12 nucleotides
CA265_RS00355: CA265_RS00355 - AraC family transcriptional regulator, at 81,913 to 82,728
_RS00355
CA265_RS00360: CA265_RS00360 - hypothetical protein, at 82,935 to 83,264
_RS00360
CA265_RS00365: CA265_RS00365 - two-component sensor histidine kinase, at 83,277 to 84,632
_RS00365
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1 at 81.947 kb on - strand at 82.001 kb on + strand, within CA265_RS00355 at 82.001 kb on + strand, within CA265_RS00355 at 82.002 kb on - strand, within CA265_RS00355 at 82.179 kb on + strand, within CA265_RS00355 at 82.405 kb on + strand, within CA265_RS00355 at 82.405 kb on + strand, within CA265_RS00355 at 82.406 kb on - strand, within CA265_RS00355 at 82.519 kb on + strand, within CA265_RS00355 at 82.530 kb on + strand, within CA265_RS00355 at 82.621 kb on + strand, within CA265_RS00355 at 82.621 kb on + strand, within CA265_RS00355 at 82.744 kb on - strand at 82.760 kb on + strand at 82.761 kb on - strand at 82.761 kb on - strand at 82.770 kb on - strand at 82.833 kb on - strand at 82.857 kb on + strand at 82.857 kb on + strand at 82.858 kb on - strand at 82.918 kb on + strand at 83.060 kb on + strand, within CA265_RS00360 at 83.085 kb on + strand, within CA265_RS00360 at 83.122 kb on - strand, within CA265_RS00360 at 83.125 kb on - strand, within CA265_RS00360 at 83.132 kb on + strand, within CA265_RS00360 at 83.133 kb on - strand, within CA265_RS00360 at 83.157 kb on - strand, within CA265_RS00360 at 83.224 kb on + strand, within CA265_RS00360 at 83.343 kb on - strand at 83.390 kb on + strand at 83.395 kb on + strand at 83.427 kb on + strand, within CA265_RS00365 at 83.478 kb on + strand, within CA265_RS00365 at 83.479 kb on - strand, within CA265_RS00365 at 83.479 kb on - strand at 83.489 kb on + strand, within CA265_RS00365 at 83.489 kb on + strand, within CA265_RS00365 at 83.523 kb on - strand, within CA265_RS00365 at 83.568 kb on + strand, within CA265_RS00365 at 83.569 kb on - strand, within CA265_RS00365 at 83.632 kb on - strand, within CA265_RS00365 at 83.667 kb on - strand, within CA265_RS00365 at 83.712 kb on - strand, within CA265_RS00365 at 83.712 kb on - strand, within CA265_RS00365 at 83.730 kb on + strand, within CA265_RS00365 at 83.731 kb on - strand, within CA265_RS00365 at 83.745 kb on + strand, within CA265_RS00365 at 83.801 kb on + strand, within CA265_RS00365 at 83.930 kb on + strand, within CA265_RS00365 at 84.056 kb on + strand, within CA265_RS00365 at 84.057 kb on - strand, within CA265_RS00365 at 84.059 kb on + strand, within CA265_RS00365 at 84.060 kb on - strand, within CA265_RS00365 at 84.095 kb on + strand, within CA265_RS00365 at 84.116 kb on + strand, within CA265_RS00365 at 84.164 kb on + strand, within CA265_RS00365 at 84.164 kb on + strand, within CA265_RS00365 at 84.183 kb on - strand, within CA265_RS00365 at 84.199 kb on + strand, within CA265_RS00365 at 84.201 kb on + strand, within CA265_RS00365 at 84.217 kb on - strand, within CA265_RS00365 at 84.217 kb on - strand, within CA265_RS00365 at 84.217 kb on - strand, within CA265_RS00365
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 81,947 - -0.4 82,001 + CA265_RS00355 0.11 -0.3 82,001 + CA265_RS00355 0.11 -2.2 82,002 - CA265_RS00355 0.11 -0.4 82,179 + CA265_RS00355 0.33 -1.8 82,405 + CA265_RS00355 0.60 -0.3 82,405 + CA265_RS00355 0.60 +1.1 82,406 - CA265_RS00355 0.60 -0.1 82,519 + CA265_RS00355 0.74 +0.1 82,530 + CA265_RS00355 0.76 +0.2 82,621 + CA265_RS00355 0.87 -1.3 82,621 + CA265_RS00355 0.87 -0.2 82,744 - -0.1 82,760 + -0.2 82,761 - +0.2 82,761 - +0.1 82,770 - +0.3 82,833 - -0.3 82,857 + -0.0 82,857 + +0.8 82,858 - -0.1 82,918 + -0.6 83,060 + CA265_RS00360 0.38 +0.3 83,085 + CA265_RS00360 0.45 +0.9 83,122 - CA265_RS00360 0.57 +0.2 83,125 - CA265_RS00360 0.58 -0.2 83,132 + CA265_RS00360 0.60 -0.0 83,133 - CA265_RS00360 0.60 +0.9 83,157 - CA265_RS00360 0.67 -0.8 83,224 + CA265_RS00360 0.88 +0.9 83,343 - -0.6 83,390 + +0.1 83,395 + +0.0 83,427 + CA265_RS00365 0.11 +1.1 83,478 + CA265_RS00365 0.15 -0.3 83,479 - CA265_RS00365 0.15 +0.1 83,479 - +1.2 83,489 + CA265_RS00365 0.16 +0.3 83,489 + CA265_RS00365 0.16 -1.2 83,523 - CA265_RS00365 0.18 +0.2 83,568 + CA265_RS00365 0.21 -1.3 83,569 - CA265_RS00365 0.22 -0.2 83,632 - CA265_RS00365 0.26 +0.3 83,667 - CA265_RS00365 0.29 -0.1 83,712 - CA265_RS00365 0.32 +0.8 83,712 - CA265_RS00365 0.32 -0.3 83,730 + CA265_RS00365 0.33 +0.4 83,731 - CA265_RS00365 0.33 -0.7 83,745 + CA265_RS00365 0.35 +0.4 83,801 + CA265_RS00365 0.39 +1.4 83,930 + CA265_RS00365 0.48 +0.1 84,056 + CA265_RS00365 0.57 -0.9 84,057 - CA265_RS00365 0.58 -0.1 84,059 + CA265_RS00365 0.58 +0.2 84,060 - CA265_RS00365 0.58 -1.2 84,095 + CA265_RS00365 0.60 -2.2 84,116 + CA265_RS00365 0.62 +0.5 84,164 + CA265_RS00365 0.65 -1.1 84,164 + CA265_RS00365 0.65 -0.6 84,183 - CA265_RS00365 0.67 +0.6 84,199 + CA265_RS00365 0.68 -0.3 84,201 + CA265_RS00365 0.68 +0.3 84,217 - CA265_RS00365 0.69 -0.6 84,217 - CA265_RS00365 0.69 -1.3 84,217 - CA265_RS00365 0.69 +0.0
Or see this region's nucleotide sequence