Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00265

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00260 and CA265_RS00265 are separated by 62 nucleotidesCA265_RS00265 and CA265_RS00270 are separated by 9 nucleotidesCA265_RS00270 and CA265_RS00275 overlap by 1 nucleotides CA265_RS00260: CA265_RS00260 - hypothetical protein, at 61,604 to 62,698 _RS00260 CA265_RS00265: CA265_RS00265 - RNA polymerase sigma-70 factor, at 62,761 to 63,426 _RS00265 CA265_RS00270: CA265_RS00270 - hypothetical protein, at 63,436 to 64,395 _RS00270 CA265_RS00275: CA265_RS00275 - hypothetical protein, at 64,395 to 66,131 _RS00275 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1at 61.764 kb on + strand, within CA265_RS00260at 61.813 kb on - strand, within CA265_RS00260at 61.882 kb on + strand, within CA265_RS00260at 61.882 kb on + strand, within CA265_RS00260at 61.882 kb on + strand, within CA265_RS00260at 61.928 kb on - strand, within CA265_RS00260at 61.978 kb on + strand, within CA265_RS00260at 61.982 kb on + strand, within CA265_RS00260at 61.983 kb on - strand, within CA265_RS00260at 62.062 kb on + strand, within CA265_RS00260at 62.155 kb on + strand, within CA265_RS00260at 62.201 kb on - strand, within CA265_RS00260at 62.246 kb on - strand, within CA265_RS00260at 62.246 kb on - strand, within CA265_RS00260at 62.336 kb on + strand, within CA265_RS00260at 62.336 kb on + strand, within CA265_RS00260at 62.336 kb on + strand, within CA265_RS00260at 62.336 kb on + strand, within CA265_RS00260at 62.372 kb on - strand, within CA265_RS00260at 62.372 kb on - strand, within CA265_RS00260at 62.435 kb on - strand, within CA265_RS00260at 62.489 kb on + strand, within CA265_RS00260at 62.536 kb on + strand, within CA265_RS00260at 62.649 kb on + strandat 62.672 kb on - strandat 62.672 kb on - strandat 62.702 kb on - strandat 62.810 kb on + strandat 62.819 kb on + strandat 62.821 kb on + strandat 62.821 kb on + strandat 62.821 kb on + strandat 62.822 kb on - strandat 63.035 kb on + strand, within CA265_RS00265at 63.043 kb on - strand, within CA265_RS00265at 63.044 kb on + strand, within CA265_RS00265at 63.053 kb on - strand, within CA265_RS00265at 63.079 kb on - strand, within CA265_RS00265at 63.204 kb on - strand, within CA265_RS00265at 63.300 kb on - strand, within CA265_RS00265at 63.305 kb on + strand, within CA265_RS00265at 63.404 kb on - strandat 63.406 kb on + strandat 63.569 kb on + strand, within CA265_RS00270at 63.720 kb on + strand, within CA265_RS00270at 64.162 kb on + strand, within CA265_RS00270at 64.162 kb on + strand, within CA265_RS00270at 64.408 kb on + strandat 64.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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61,764 + CA265_RS00260 0.15 +0.1
61,813 - CA265_RS00260 0.19 -1.3
61,882 + CA265_RS00260 0.25 +0.6
61,882 + CA265_RS00260 0.25 +0.1
61,882 + CA265_RS00260 0.25 -0.4
61,928 - CA265_RS00260 0.30 +0.1
61,978 + CA265_RS00260 0.34 -1.2
61,982 + CA265_RS00260 0.35 -0.6
61,983 - CA265_RS00260 0.35 +0.1
62,062 + CA265_RS00260 0.42 -0.7
62,155 + CA265_RS00260 0.50 -0.6
62,201 - CA265_RS00260 0.55 -0.2
62,246 - CA265_RS00260 0.59 +0.2
62,246 - CA265_RS00260 0.59 +0.4
62,336 + CA265_RS00260 0.67 +0.0
62,336 + CA265_RS00260 0.67 -0.1
62,336 + CA265_RS00260 0.67 +0.3
62,336 + CA265_RS00260 0.67 -0.6
62,372 - CA265_RS00260 0.70 +0.6
62,372 - CA265_RS00260 0.70 -0.0
62,435 - CA265_RS00260 0.76 +0.0
62,489 + CA265_RS00260 0.81 +0.3
62,536 + CA265_RS00260 0.85 -0.2
62,649 + +0.1
62,672 - +0.4
62,672 - -0.2
62,702 - -0.2
62,810 + -0.2
62,819 + +0.1
62,821 + +0.2
62,821 + +0.3
62,821 + -0.2
62,822 - +0.3
63,035 + CA265_RS00265 0.41 +1.3
63,043 - CA265_RS00265 0.42 +0.4
63,044 + CA265_RS00265 0.42 -0.8
63,053 - CA265_RS00265 0.44 -1.2
63,079 - CA265_RS00265 0.48 +0.4
63,204 - CA265_RS00265 0.67 +1.5
63,300 - CA265_RS00265 0.81 +0.6
63,305 + CA265_RS00265 0.82 +0.6
63,404 - -0.3
63,406 + -0.2
63,569 + CA265_RS00270 0.14 -2.2
63,720 + CA265_RS00270 0.30 +0.1
64,162 + CA265_RS00270 0.76 -0.2
64,162 + CA265_RS00270 0.76 +0.4
64,408 + -0.5
64,418 - +0.1

Or see this region's nucleotide sequence