Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36530 and BPHYT_RS36535 are separated by 85 nucleotides BPHYT_RS36535 and BPHYT_RS36540 are separated by 50 nucleotides BPHYT_RS36540 and BPHYT_RS36545 overlap by 4 nucleotides BPHYT_RS36545 and BPHYT_RS36550 are separated by 134 nucleotides
BPHYT_RS36530: BPHYT_RS36530 - hypothetical protein, at 111,168 to 111,620
_RS36530
BPHYT_RS36535: BPHYT_RS36535 - hypothetical protein, at 111,706 to 111,972
_RS36535
BPHYT_RS36540: BPHYT_RS36540 - hypothetical protein, at 112,023 to 112,214
_RS36540
BPHYT_RS36545: BPHYT_RS36545 - Resolvase helix-turn-helix domain-containing protein, at 112,211 to 112,597
_RS36545
BPHYT_RS36550: BPHYT_RS36550 - hypothetical protein, at 112,732 to 113,697
_RS36550
Position (kb) 112
113 Strain fitness (log2 ratio) -1
0
1 at 111.270 kb on - strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.402 kb on - strand, within BPHYT_RS36530 at 111.411 kb on + strand, within BPHYT_RS36530 at 111.536 kb on - strand, within BPHYT_RS36530 at 111.618 kb on + strand at 111.619 kb on - strand at 111.682 kb on - strand at 111.682 kb on - strand at 111.691 kb on + strand at 111.728 kb on + strand at 111.886 kb on + strand, within BPHYT_RS36535 at 111.886 kb on + strand, within BPHYT_RS36535 at 111.887 kb on - strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 112.012 kb on - strand at 112.028 kb on + strand at 112.074 kb on + strand, within BPHYT_RS36540 at 112.154 kb on - strand, within BPHYT_RS36540 at 112.206 kb on - strand at 112.324 kb on + strand at 112.401 kb on + strand, within BPHYT_RS36545 at 112.481 kb on + strand, within BPHYT_RS36545 at 112.485 kb on + strand, within BPHYT_RS36545 at 112.550 kb on + strand, within BPHYT_RS36545
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.064 mg/ml remove 111,270 - BPHYT_RS36530 0.23 +0.2 111,318 + BPHYT_RS36530 0.33 -0.5 111,318 + BPHYT_RS36530 0.33 -1.1 111,319 - BPHYT_RS36530 0.33 +0.1 111,319 - BPHYT_RS36530 0.33 -0.5 111,319 - BPHYT_RS36530 0.33 +0.1 111,402 - BPHYT_RS36530 0.52 +0.1 111,411 + BPHYT_RS36530 0.54 +0.0 111,536 - BPHYT_RS36530 0.81 +0.2 111,618 + -0.9 111,619 - +0.4 111,682 - +0.1 111,682 - -0.1 111,691 + +0.1 111,728 + -0.4 111,886 + BPHYT_RS36535 0.67 +0.7 111,886 + BPHYT_RS36535 0.67 -0.6 111,887 - BPHYT_RS36535 0.68 +0.4 111,930 + BPHYT_RS36535 0.84 -1.0 111,930 + BPHYT_RS36535 0.84 -1.4 111,930 + BPHYT_RS36535 0.84 -0.4 112,012 - -0.3 112,028 + -0.3 112,074 + BPHYT_RS36540 0.27 -0.1 112,154 - BPHYT_RS36540 0.68 +0.6 112,206 - +0.4 112,324 + +1.5 112,401 + BPHYT_RS36545 0.49 -0.2 112,481 + BPHYT_RS36545 0.70 -0.4 112,485 + BPHYT_RS36545 0.71 +0.2 112,550 + BPHYT_RS36545 0.88 -0.1
Or see this region's nucleotide sequence