Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36300 and BPHYT_RS36305 overlap by 32 nucleotides BPHYT_RS36305 and BPHYT_RS36310 are separated by 4 nucleotides BPHYT_RS36310 and BPHYT_RS36315 overlap by 17 nucleotides
BPHYT_RS36300: BPHYT_RS36300 - hypothetical protein, at 73,140 to 73,421
_RS36300
BPHYT_RS36305: BPHYT_RS36305 - hypothetical protein, at 73,390 to 73,812
_RS36305
BPHYT_RS36310: BPHYT_RS36310 - hypothetical protein, at 73,817 to 74,152
_RS36310
BPHYT_RS36315: BPHYT_RS36315 - CagE TrbE VirB component of type IV transporter system, at 74,136 to 76,685
_RS36315
Position (kb) 73
74
75 Strain fitness (log2 ratio) -1
0
1
2
3 at 72.947 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.095 kb on - strand at 73.135 kb on - strand at 73.135 kb on - strand at 73.314 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.420 kb on - strand at 73.452 kb on + strand, within BPHYT_RS36305 at 73.501 kb on + strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.600 kb on - strand, within BPHYT_RS36305 at 73.653 kb on - strand, within BPHYT_RS36305 at 73.817 kb on - strand at 73.884 kb on - strand, within BPHYT_RS36310 at 73.884 kb on - strand, within BPHYT_RS36310 at 73.888 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.049 kb on - strand, within BPHYT_RS36310 at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.146 kb on - strand at 74.178 kb on - strand at 74.184 kb on + strand at 74.184 kb on + strand at 74.199 kb on - strand at 74.199 kb on - strand at 74.250 kb on - strand at 74.422 kb on - strand, within BPHYT_RS36315 at 74.430 kb on + strand, within BPHYT_RS36315 at 74.431 kb on - strand, within BPHYT_RS36315 at 74.519 kb on + strand, within BPHYT_RS36315 at 74.520 kb on - strand, within BPHYT_RS36315 at 74.520 kb on - strand, within BPHYT_RS36315 at 74.520 kb on - strand, within BPHYT_RS36315 at 74.700 kb on - strand, within BPHYT_RS36315 at 74.722 kb on - strand, within BPHYT_RS36315 at 74.853 kb on + strand, within BPHYT_RS36315 at 74.863 kb on + strand, within BPHYT_RS36315 at 74.863 kb on + strand, within BPHYT_RS36315
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.064 mg/ml remove 72,947 - +0.1 73,049 - +0.7 73,049 - -0.4 73,095 - +1.9 73,135 - +1.9 73,135 - +0.9 73,314 - BPHYT_RS36300 0.62 +2.2 73,362 - BPHYT_RS36300 0.79 +1.7 73,362 - BPHYT_RS36300 0.79 +1.7 73,362 - BPHYT_RS36300 0.79 +1.6 73,362 - BPHYT_RS36300 0.79 +1.2 73,362 - BPHYT_RS36300 0.79 +3.6 73,420 - +1.7 73,452 + BPHYT_RS36305 0.15 -0.2 73,501 + BPHYT_RS36305 0.26 -0.6 73,502 - BPHYT_RS36305 0.26 -0.1 73,502 - BPHYT_RS36305 0.26 +0.7 73,502 - BPHYT_RS36305 0.26 +0.6 73,502 - BPHYT_RS36305 0.26 +1.2 73,502 - BPHYT_RS36305 0.26 -0.9 73,502 - BPHYT_RS36305 0.26 +0.4 73,502 - BPHYT_RS36305 0.26 +0.3 73,600 - BPHYT_RS36305 0.50 +1.4 73,653 - BPHYT_RS36305 0.62 -0.2 73,817 - +0.3 73,884 - BPHYT_RS36310 0.20 +0.4 73,884 - BPHYT_RS36310 0.20 +1.5 73,888 - BPHYT_RS36310 0.21 -0.2 74,043 - BPHYT_RS36310 0.67 +1.0 74,043 - BPHYT_RS36310 0.67 -0.0 74,043 - BPHYT_RS36310 0.67 -0.1 74,043 - BPHYT_RS36310 0.67 +0.8 74,049 - BPHYT_RS36310 0.69 +0.7 74,136 - +0.5 74,136 - +0.3 74,136 - +0.3 74,136 - -0.4 74,136 - +0.7 74,146 - +0.5 74,178 - +0.2 74,184 + +0.4 74,184 + +0.6 74,199 - -0.4 74,199 - +0.7 74,250 - +0.6 74,422 - BPHYT_RS36315 0.11 +0.7 74,430 + BPHYT_RS36315 0.12 -0.5 74,431 - BPHYT_RS36315 0.12 -0.1 74,519 + BPHYT_RS36315 0.15 -0.1 74,520 - BPHYT_RS36315 0.15 -0.1 74,520 - BPHYT_RS36315 0.15 +0.4 74,520 - BPHYT_RS36315 0.15 +0.6 74,700 - BPHYT_RS36315 0.22 +0.1 74,722 - BPHYT_RS36315 0.23 +0.0 74,853 + BPHYT_RS36315 0.28 -0.0 74,863 + BPHYT_RS36315 0.29 -0.3 74,863 + BPHYT_RS36315 0.29 -0.9
Or see this region's nucleotide sequence