Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35685 and BPHYT_RS35690 are separated by 12 nucleotides BPHYT_RS35690 and BPHYT_RS35695 overlap by 4 nucleotides BPHYT_RS35695 and BPHYT_RS35700 are separated by 238 nucleotides
BPHYT_RS35685: BPHYT_RS35685 - RpiR family transcriptional regulator, at 3,597,966 to 3,598,829
_RS35685
BPHYT_RS35690: BPHYT_RS35690 - IclR family transcriptional regulator, at 3,598,842 to 3,599,729
_RS35690
BPHYT_RS35695: BPHYT_RS35695 - IclR family transcriptional regulator, at 3,599,726 to 3,600,613
_RS35695
BPHYT_RS35700: BPHYT_RS35700 - beta-lactamase domain-containing protein, at 3,600,852 to 3,601,811
_RS35700
Position (kb)
3599
3600
3601 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3598.844 kb on - strand at 3599.243 kb on - strand, within BPHYT_RS35690 at 3600.637 kb on + strand at 3600.638 kb on - strand at 3600.645 kb on + strand at 3600.646 kb on - strand at 3600.713 kb on - strand at 3600.746 kb on - strand at 3600.746 kb on - strand at 3600.746 kb on - strand at 3600.747 kb on + strand at 3600.825 kb on + strand at 3600.825 kb on + strand at 3600.826 kb on - strand at 3600.928 kb on - strand at 3601.072 kb on - strand, within BPHYT_RS35700 at 3601.123 kb on - strand, within BPHYT_RS35700 at 3601.167 kb on + strand, within BPHYT_RS35700 at 3601.167 kb on + strand, within BPHYT_RS35700 at 3601.167 kb on + strand, within BPHYT_RS35700 at 3601.168 kb on - strand, within BPHYT_RS35700 at 3601.168 kb on - strand, within BPHYT_RS35700
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.064 mg/ml remove 3,598,844 - -0.9 3,599,243 - BPHYT_RS35690 0.45 +1.0 3,600,637 + -0.2 3,600,638 - +0.1 3,600,645 + -0.1 3,600,646 - -1.3 3,600,713 - -0.1 3,600,746 - -1.0 3,600,746 - -1.8 3,600,746 - -1.0 3,600,747 + -0.4 3,600,825 + +0.3 3,600,825 + +0.2 3,600,826 - +1.0 3,600,928 - -0.9 3,601,072 - BPHYT_RS35700 0.23 +2.0 3,601,123 - BPHYT_RS35700 0.28 +0.3 3,601,167 + BPHYT_RS35700 0.33 +1.2 3,601,167 + BPHYT_RS35700 0.33 -0.1 3,601,167 + BPHYT_RS35700 0.33 +0.4 3,601,168 - BPHYT_RS35700 0.33 -1.1 3,601,168 - BPHYT_RS35700 0.33 -0.2
Or see this region's nucleotide sequence