Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22535 and BPHYT_RS22540 overlap by 8 nucleotides BPHYT_RS22540 and BPHYT_RS22545 are separated by 155 nucleotides BPHYT_RS22545 and BPHYT_RS22550 are separated by 60 nucleotides
BPHYT_RS22535: BPHYT_RS22535 - methionine ABC transporter ATP-binding protein, at 617,368 to 618,528
_RS22535
BPHYT_RS22540: BPHYT_RS22540 - metal ABC transporter permease, at 618,521 to 619,177
_RS22540
BPHYT_RS22545: BPHYT_RS22545 - acyl-CoA dehydrogenase, at 619,333 to 620,535
_RS22545
BPHYT_RS22550: BPHYT_RS22550 - manganese transporter, at 620,596 to 621,924
_RS22550
Position (kb) 619
620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 618.787 kb on - strand, within BPHYT_RS22540 at 618.976 kb on + strand, within BPHYT_RS22540 at 619.181 kb on + strand at 619.181 kb on + strand at 619.250 kb on - strand at 619.250 kb on - strand at 619.257 kb on + strand at 619.257 kb on + strand at 619.257 kb on + strand at 619.261 kb on + strand at 619.561 kb on + strand, within BPHYT_RS22545 at 619.562 kb on - strand, within BPHYT_RS22545 at 619.562 kb on - strand, within BPHYT_RS22545 at 620.069 kb on + strand, within BPHYT_RS22545 at 620.138 kb on - strand, within BPHYT_RS22545 at 620.527 kb on + strand at 620.528 kb on - strand at 620.738 kb on - strand, within BPHYT_RS22550 at 620.739 kb on + strand, within BPHYT_RS22550 at 620.853 kb on + strand, within BPHYT_RS22550 at 621.145 kb on + strand, within BPHYT_RS22550 at 621.145 kb on + strand, within BPHYT_RS22550 at 621.146 kb on - strand, within BPHYT_RS22550 at 621.242 kb on - strand, within BPHYT_RS22550 at 621.290 kb on - strand at 621.401 kb on + strand, within BPHYT_RS22550 at 621.487 kb on + strand, within BPHYT_RS22550 at 621.487 kb on + strand, within BPHYT_RS22550 at 621.487 kb on + strand, within BPHYT_RS22550 at 621.488 kb on - strand, within BPHYT_RS22550 at 621.489 kb on + strand, within BPHYT_RS22550 at 621.489 kb on + strand, within BPHYT_RS22550 at 621.490 kb on - strand, within BPHYT_RS22550
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.064 mg/ml remove 618,787 - BPHYT_RS22540 0.40 -0.4 618,976 + BPHYT_RS22540 0.69 +0.6 619,181 + +0.7 619,181 + -1.0 619,250 - +0.5 619,250 - +0.1 619,257 + +0.2 619,257 + +0.1 619,257 + +0.4 619,261 + +1.1 619,561 + BPHYT_RS22545 0.19 -0.0 619,562 - BPHYT_RS22545 0.19 -0.1 619,562 - BPHYT_RS22545 0.19 -1.8 620,069 + BPHYT_RS22545 0.61 +0.0 620,138 - BPHYT_RS22545 0.67 -1.6 620,527 + -0.3 620,528 - +0.1 620,738 - BPHYT_RS22550 0.11 -0.5 620,739 + BPHYT_RS22550 0.11 +0.2 620,853 + BPHYT_RS22550 0.19 +0.3 621,145 + BPHYT_RS22550 0.41 -0.5 621,145 + BPHYT_RS22550 0.41 +0.3 621,146 - BPHYT_RS22550 0.41 +0.0 621,242 - BPHYT_RS22550 0.49 -0.1 621,290 - +1.4 621,401 + BPHYT_RS22550 0.61 -0.3 621,487 + BPHYT_RS22550 0.67 -0.8 621,487 + BPHYT_RS22550 0.67 -0.9 621,487 + BPHYT_RS22550 0.67 -0.6 621,488 - BPHYT_RS22550 0.67 -0.6 621,489 + BPHYT_RS22550 0.67 -0.5 621,489 + BPHYT_RS22550 0.67 -0.2 621,490 - BPHYT_RS22550 0.67 +0.1
Or see this region's nucleotide sequence