Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18445

Experiment: Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.064 mg/ml
4,144,904	+				+0.7
4,144,969	+				+0.1
4,144,970	-				+0.0
4,145,078	+				-1.0
4,145,078	+				-0.2
4,145,078	+				-0.2
4,145,079	-				-0.2
4,145,458	-		BPHYT_RS18440	0.60	-0.6
4,145,506	-		BPHYT_RS18440	0.69	+0.5
4,145,506	-		BPHYT_RS18440	0.69	-0.4
4,145,559	-		BPHYT_RS18440	0.80	-1.4
4,145,565	+		BPHYT_RS18440	0.81	+1.4
4,145,566	-		BPHYT_RS18440	0.81	+0.4
4,145,686	+				-0.7
4,145,765	-				+0.0
4,145,889	+		BPHYT_RS18445	0.10	+0.6
4,145,890	-		BPHYT_RS18445	0.11	+0.1
4,145,979	-		BPHYT_RS18445	0.46	-0.1
4,145,979	-		BPHYT_RS18445	0.46	-0.2
4,145,979	-		BPHYT_RS18445	0.46	-1.1
4,146,126	-				-0.5
4,146,126	-				-0.2
4,146,165	-				+0.6
4,146,312	-				+0.0
4,146,315	+				+0.2
4,146,315	+				-0.9
4,146,316	-				+0.7
4,146,338	+		BPHYT_RS18450	0.11	-0.7
4,146,338	+		BPHYT_RS18450	0.11	+0.0
4,146,365	+		BPHYT_RS18450	0.13	-0.3
4,146,365	+		BPHYT_RS18450	0.13	+0.7
4,146,365	+		BPHYT_RS18450	0.13	+0.5
4,146,365	+		BPHYT_RS18450	0.13	-1.3
4,146,365	+		BPHYT_RS18450	0.13	-0.1
4,146,365	+		BPHYT_RS18450	0.13	+0.7
4,146,417	+		BPHYT_RS18450	0.17	+0.4
4,146,418	-		BPHYT_RS18450	0.17	+1.1
4,146,527	+		BPHYT_RS18450	0.26	+0.1
4,146,527	+		BPHYT_RS18450	0.26	-0.4
4,146,528	-		BPHYT_RS18450	0.26	-0.5
4,146,573	+		BPHYT_RS18450	0.29	-0.3
4,146,574	-		BPHYT_RS18450	0.29	-0.3
4,146,665	+		BPHYT_RS18450	0.36	-0.5
4,146,665	+		BPHYT_RS18450	0.36	-0.3
4,146,666	-		BPHYT_RS18450	0.36	-1.3
4,146,679	-		BPHYT_RS18450	0.37	+0.8
4,146,700	+		BPHYT_RS18450	0.39	-0.3
4,146,700	+		BPHYT_RS18450	0.39	+0.3
4,146,700	+		BPHYT_RS18450	0.39	-0.7
4,146,796	-		BPHYT_RS18450	0.46	-0.1
4,146,879	-		BPHYT_RS18450	0.53	+1.2
4,146,959	+		BPHYT_RS18450	0.59	-0.4
4,146,997	+		BPHYT_RS18450	0.62	+0.1
4,147,057	+		BPHYT_RS18450	0.66	+0.1
4,147,102	+		BPHYT_RS18450	0.70	-0.0