Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17080 and BPHYT_RS17085 are separated by 154 nucleotides BPHYT_RS17085 and BPHYT_RS17090 are separated by 187 nucleotides BPHYT_RS17090 and BPHYT_RS17095 are separated by 12 nucleotides
BPHYT_RS17080: BPHYT_RS17080 - signal recognition particle protein, at 3,871,791 to 3,873,158
_RS17080
BPHYT_RS17085: BPHYT_RS17085 - hypoxanthine phosphoribosyltransferase, at 3,873,313 to 3,873,864
_RS17085
BPHYT_RS17090: BPHYT_RS17090 - membrane protein, at 3,874,052 to 3,874,651
_RS17090
BPHYT_RS17095: BPHYT_RS17095 - proline--tRNA ligase, at 3,874,664 to 3,876,400
_RS17095
Position (kb)
3873
3874 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3873.157 kb on - strand at 3873.164 kb on - strand at 3873.248 kb on + strand at 3873.249 kb on - strand at 3873.255 kb on + strand at 3873.283 kb on + strand at 3873.283 kb on + strand at 3873.283 kb on + strand at 3873.283 kb on + strand at 3873.283 kb on + strand at 3873.283 kb on + strand at 3873.284 kb on - strand at 3873.284 kb on - strand at 3873.284 kb on - strand at 3873.284 kb on - strand at 3873.287 kb on + strand at 3873.287 kb on + strand at 3873.287 kb on + strand at 3873.287 kb on + strand at 3873.287 kb on + strand at 3873.287 kb on + strand at 3873.287 kb on + strand at 3873.288 kb on - strand at 3873.342 kb on + strand at 3873.520 kb on + strand, within BPHYT_RS17085 at 3873.520 kb on + strand, within BPHYT_RS17085 at 3873.520 kb on + strand, within BPHYT_RS17085 at 3873.521 kb on - strand, within BPHYT_RS17085 at 3873.521 kb on - strand, within BPHYT_RS17085 at 3873.599 kb on + strand, within BPHYT_RS17085 at 3873.600 kb on - strand, within BPHYT_RS17085 at 3873.757 kb on + strand, within BPHYT_RS17085 at 3873.758 kb on - strand, within BPHYT_RS17085 at 3873.784 kb on + strand, within BPHYT_RS17085 at 3873.784 kb on + strand, within BPHYT_RS17085 at 3873.785 kb on - strand, within BPHYT_RS17085 at 3873.862 kb on + strand at 3874.027 kb on + strand at 3874.644 kb on + strand at 3874.644 kb on + strand at 3874.645 kb on - strand at 3874.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.064 mg/ml remove 3,873,157 - +0.4 3,873,164 - +1.6 3,873,248 + -0.8 3,873,249 - +1.8 3,873,255 + +1.1 3,873,283 + -0.6 3,873,283 + +0.2 3,873,283 + +0.4 3,873,283 + -0.6 3,873,283 + +0.4 3,873,283 + +0.6 3,873,284 - -1.0 3,873,284 - +0.2 3,873,284 - -0.8 3,873,284 - +0.0 3,873,287 + +0.1 3,873,287 + -0.3 3,873,287 + -0.8 3,873,287 + +0.2 3,873,287 + -0.2 3,873,287 + +0.4 3,873,287 + +0.1 3,873,288 - -0.2 3,873,342 + +0.5 3,873,520 + BPHYT_RS17085 0.38 +0.5 3,873,520 + BPHYT_RS17085 0.38 -0.5 3,873,520 + BPHYT_RS17085 0.38 +0.5 3,873,521 - BPHYT_RS17085 0.38 -0.2 3,873,521 - BPHYT_RS17085 0.38 +0.9 3,873,599 + BPHYT_RS17085 0.52 -0.0 3,873,600 - BPHYT_RS17085 0.52 -1.1 3,873,757 + BPHYT_RS17085 0.80 +1.0 3,873,758 - BPHYT_RS17085 0.81 +0.4 3,873,784 + BPHYT_RS17085 0.85 +1.9 3,873,784 + BPHYT_RS17085 0.85 -0.6 3,873,785 - BPHYT_RS17085 0.86 +1.4 3,873,862 + -1.3 3,874,027 + -0.5 3,874,644 + -1.8 3,874,644 + +0.3 3,874,645 - +0.2 3,874,645 - -0.3
Or see this region's nucleotide sequence