Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17070
Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.064 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,869,473 | - | +0.3 | |||
3,869,473 | - | +1.4 | |||
3,869,491 | - | -0.3 | |||
3,869,647 | - | -0.0 | |||
3,869,680 | - | -1.0 | |||
3,869,680 | - | -0.6 | |||
3,869,682 | - | -0.2 | |||
3,869,682 | - | +0.4 | |||
3,869,711 | - | -1.2 | |||
3,869,711 | - | -0.1 | |||
3,870,422 | + | -0.5 | |||
3,870,760 | - | -0.5 | |||
3,870,787 | - | +0.3 | |||
3,870,833 | - | -0.4 | |||
3,870,833 | - | +0.5 | |||
3,871,020 | + | BPHYT_RS17075 | 0.26 | -1.5 | |
3,871,020 | + | BPHYT_RS17075 | 0.26 | -2.8 | |
3,871,021 | - | BPHYT_RS17075 | 0.26 | -0.6 | |
3,871,403 | - | BPHYT_RS17075 | 0.67 | -1.1 | |
3,871,403 | - | BPHYT_RS17075 | 0.67 | -0.7 | |
3,871,484 | + | BPHYT_RS17075 | 0.76 | -1.7 | |
3,871,694 | - | -1.4 | |||
3,871,694 | - | -0.5 | |||
3,871,698 | + | -1.8 | |||
3,871,698 | + | -0.5 | |||
3,871,698 | + | -1.8 | |||
3,871,698 | + | -2.0 | |||
3,871,699 | - | -0.2 | |||
3,871,699 | - | -0.2 | |||
3,871,720 | + | -0.8 | |||
3,871,725 | + | -0.5 |
Or see this region's nucleotide sequence