Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16990

Experiment: Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.064 mg/ml
3,852,214	-				+2.6
3,852,214	-				-0.5
3,852,214	-				+1.9
3,852,301	+				+2.3
3,852,301	+				+3.7
3,852,396	-				+0.5
3,852,485	+		BPHYT_RS16985	0.12	+2.0
3,852,485	+		BPHYT_RS16985	0.12	+1.7
3,852,485	+		BPHYT_RS16985	0.12	+1.8
3,852,531	+		BPHYT_RS16985	0.19	+1.2
3,852,532	-		BPHYT_RS16985	0.19	+0.1
3,852,532	-		BPHYT_RS16985	0.19	-0.5
3,852,605	+		BPHYT_RS16985	0.32	+1.7
3,852,608	+		BPHYT_RS16985	0.32	+0.0
3,852,806	+		BPHYT_RS16985	0.65	+1.9
3,852,807	-		BPHYT_RS16985	0.65	-0.8
3,853,008	-				-0.9
3,853,008	-				-0.2
3,853,008	-				-0.5
3,853,242	+		BPHYT_RS16990	0.16	+1.7
3,853,417	+		BPHYT_RS16990	0.29	+1.7
3,853,417	+		BPHYT_RS16990	0.29	+1.2
3,853,418	-		BPHYT_RS16990	0.29	+0.0
3,853,612	+		BPHYT_RS16990	0.43	+2.2
3,853,613	-		BPHYT_RS16990	0.43	+1.9
3,854,143	+		BPHYT_RS16990	0.81	+2.3
3,854,143	+		BPHYT_RS16990	0.81	+1.8
3,854,144	-		BPHYT_RS16990	0.81	-0.3
3,854,408	+				+1.8
3,854,408	+				+1.6
3,854,409	-				-0.1
3,854,409	-				+0.7
3,854,409	-				+0.4
3,854,409	-				+0.1
3,854,451	+				+2.2
3,854,451	+				+1.5
3,854,454	+				+0.7
3,854,454	+				+0.0
3,854,573	+				+3.5
3,854,573	+				+1.4
3,854,573	+				+1.5
3,854,573	+				+1.9
3,854,574	-				-0.3
3,854,579	-				+0.4
3,854,672	+				-1.2
3,854,673	-				-0.1
3,854,675	+				-0.2
3,854,676	-				-0.8
3,854,778	-		BPHYT_RS16995	0.14	+0.2
3,854,882	+		BPHYT_RS16995	0.30	+0.2
3,854,883	-		BPHYT_RS16995	0.30	+1.4
3,854,883	-		BPHYT_RS16995	0.30	+0.7
3,854,981	+		BPHYT_RS16995	0.45	-1.2
3,854,981	+		BPHYT_RS16995	0.45	-0.3
3,855,074	+		BPHYT_RS16995	0.59	-0.1
3,855,075	-		BPHYT_RS16995	0.59	+0.8
3,855,075	-		BPHYT_RS16995	0.59	+0.4
3,855,099	-		BPHYT_RS16995	0.63	+0.7
3,855,099	-		BPHYT_RS16995	0.63	-1.2
3,855,138	-		BPHYT_RS16995	0.69	+0.6
3,855,218	+		BPHYT_RS16995	0.81	-0.4
3,855,328	+				+0.3
3,855,329	-				+0.5
3,855,329	-				+1.4
3,855,329	-				+0.7
3,855,339	-				+0.2
3,855,339	-				-0.1
3,855,339	-				-1.3
3,855,356	+				-0.1
3,855,357	-				+0.4