Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14515

Experiment: Paraquat dichloride 0.064 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.064 mg/ml
3,307,951	+				+0.2
3,307,971	+				+0.2
3,307,971	+				+0.4
3,307,971	+				+0.2
3,307,971	+				-0.2
3,307,972	-				-0.1
3,307,972	-				+0.1
3,308,035	-		BPHYT_RS14505	0.22	+1.3
3,308,181	+		BPHYT_RS14505	0.75	-0.6
3,308,181	+		BPHYT_RS14505	0.75	-0.1
3,308,181	+		BPHYT_RS14505	0.75	-0.2
3,308,309	+		BPHYT_RS14510	0.12	-0.8
3,308,462	+		BPHYT_RS14510	0.44	+0.0
3,308,492	+		BPHYT_RS14510	0.50	-0.6
3,308,493	-		BPHYT_RS14510	0.50	+0.4
3,308,507	+		BPHYT_RS14510	0.53	-0.2
3,308,507	+		BPHYT_RS14510	0.53	+0.1
3,308,508	-		BPHYT_RS14510	0.53	-1.1
3,308,508	-		BPHYT_RS14510	0.53	-0.4
3,308,799	+				-0.7
3,308,951	+				+0.8
3,309,098	+		BPHYT_RS14515	0.19	+0.2
3,309,198	+		BPHYT_RS14515	0.26	-0.4
3,309,199	-		BPHYT_RS14515	0.26	-0.2
3,309,199	-		BPHYT_RS14515	0.26	-0.9
3,309,199	-		BPHYT_RS14515	0.26	-0.9
3,309,367	+		BPHYT_RS14515	0.38	+0.0
3,309,368	-		BPHYT_RS14515	0.38	-0.6
3,309,368	-		BPHYT_RS14515	0.38	-0.3
3,309,368	-		BPHYT_RS14515	0.38	-0.3
3,309,584	+		BPHYT_RS14515	0.53	-0.4
3,309,585	-		BPHYT_RS14515	0.53	-0.7
3,309,708	-		BPHYT_RS14515	0.61	-1.6
3,309,858	+		BPHYT_RS14515	0.71	-0.4
3,309,859	-		BPHYT_RS14515	0.71	+1.0
3,309,859	-		BPHYT_RS14515	0.71	+0.3
3,309,864	-		BPHYT_RS14515	0.72	+0.2
3,310,221	-				-0.8
3,310,261	+				+0.1
3,310,261	+				-0.6
3,310,261	+				-0.8
3,310,261	+				-0.3
3,310,261	+				-0.2
3,310,262	-				-0.2
3,310,262	-				-0.5
3,310,262	-				+0.0
3,310,515	-		BPHYT_RS14520	0.25	-0.3
3,310,635	+		BPHYT_RS14520	0.37	+0.5
3,310,636	-		BPHYT_RS14520	0.37	-0.8
3,310,636	-		BPHYT_RS14520	0.37	-0.3
3,310,643	+		BPHYT_RS14520	0.38	-0.1
3,310,644	-		BPHYT_RS14520	0.38	+0.1
3,310,688	+		BPHYT_RS14520	0.42	+0.5
3,310,689	-		BPHYT_RS14520	0.43	-1.6
3,310,689	-		BPHYT_RS14520	0.43	+0.3
3,310,692	+		BPHYT_RS14520	0.43	+0.3
3,310,692	+		BPHYT_RS14520	0.43	-0.4
3,310,693	-		BPHYT_RS14520	0.43	-0.4
3,310,693	-		BPHYT_RS14520	0.43	+2.0
3,310,747	-		BPHYT_RS14520	0.48	-0.2
3,310,747	-		BPHYT_RS14520	0.48	-0.4
3,310,747	-		BPHYT_RS14520	0.48	-0.1
3,310,860	+		BPHYT_RS14520	0.60	-0.6
3,310,860	+		BPHYT_RS14520	0.60	+0.5
3,310,860	+		BPHYT_RS14520	0.60	+0.5
3,310,861	-		BPHYT_RS14520	0.60	-0.7
3,311,034	+		BPHYT_RS14520	0.77	-1.0
3,311,035	-		BPHYT_RS14520	0.77	-0.5
3,311,048	-		BPHYT_RS14520	0.79	+0.4
3,311,197	-				+0.7
3,311,197	-				-0.4
3,311,271	-				+0.3