Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04050
Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.064 mg/ml |
---|---|---|---|---|---|
remove | |||||
922,729 | - | BPHYT_RS04045 | 0.26 | +1.4 | |
922,732 | - | BPHYT_RS04045 | 0.26 | +0.8 | |
922,816 | - | BPHYT_RS04045 | 0.34 | +0.1 | |
923,073 | + | BPHYT_RS04045 | 0.56 | +0.0 | |
923,457 | + | BPHYT_RS04045 | 0.89 | -0.1 | |
923,744 | + | +0.2 | |||
923,744 | + | -1.5 | |||
923,979 | - | BPHYT_RS04050 | 0.23 | -0.2 | |
923,979 | - | BPHYT_RS04050 | 0.23 | -0.2 | |
924,179 | - | BPHYT_RS04050 | 0.40 | -0.2 | |
924,179 | - | BPHYT_RS04050 | 0.40 | -1.2 | |
924,550 | + | BPHYT_RS04050 | 0.70 | -0.7 | |
924,877 | + | -1.8 | |||
924,878 | - | -0.2 | |||
924,878 | - | +0.4 | |||
924,920 | + | -0.1 | |||
924,986 | + | -1.2 | |||
924,991 | - | +0.7 | |||
925,148 | + | -0.4 | |||
925,149 | - | -0.4 | |||
925,659 | + | BPHYT_RS04055 | 0.34 | +0.5 | |
925,660 | - | BPHYT_RS04055 | 0.34 | -0.3 | |
925,663 | - | BPHYT_RS04055 | 0.34 | -1.2 | |
925,755 | + | BPHYT_RS04055 | 0.41 | -1.1 |
Or see this region's nucleotide sequence