Experiment: Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01775 and BPHYT_RS01780 overlap by 4 nucleotides BPHYT_RS01780 and BPHYT_RS01785 are separated by 375 nucleotides BPHYT_RS01785 and BPHYT_RS01790 are separated by 294 nucleotides BPHYT_RS01790 and BPHYT_RS01795 are separated by 10 nucleotides
BPHYT_RS01775: BPHYT_RS01775 - hypothetical protein, at 404,469 to 404,813
_RS01775
BPHYT_RS01780: BPHYT_RS01780 - hypothetical protein, at 404,810 to 405,178
_RS01780
BPHYT_RS01785: BPHYT_RS01785 - amino acid permease, at 405,554 to 406,945
_RS01785
BPHYT_RS01790: BPHYT_RS01790 - LuxR family transcriptional regulator, at 407,240 to 407,896
_RS01790
BPHYT_RS01795: BPHYT_RS01795 - histidine kinase, at 407,907 to 408,785
_RS01795
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 404.588 kb on + strand, within BPHYT_RS01775 at 404.589 kb on - strand, within BPHYT_RS01775 at 404.596 kb on + strand, within BPHYT_RS01775 at 404.597 kb on - strand, within BPHYT_RS01775 at 404.705 kb on - strand, within BPHYT_RS01775 at 404.717 kb on + strand, within BPHYT_RS01775 at 404.718 kb on - strand, within BPHYT_RS01775 at 404.720 kb on + strand, within BPHYT_RS01775 at 404.721 kb on - strand, within BPHYT_RS01775 at 404.721 kb on - strand, within BPHYT_RS01775 at 404.820 kb on - strand at 404.867 kb on + strand, within BPHYT_RS01780 at 404.868 kb on - strand, within BPHYT_RS01780 at 404.868 kb on - strand, within BPHYT_RS01780 at 404.868 kb on - strand, within BPHYT_RS01780 at 404.876 kb on - strand, within BPHYT_RS01780 at 405.024 kb on - strand, within BPHYT_RS01780 at 405.144 kb on - strand at 405.146 kb on - strand at 405.214 kb on + strand at 405.214 kb on + strand at 405.284 kb on - strand at 405.325 kb on - strand at 405.373 kb on + strand at 405.373 kb on + strand at 405.527 kb on + strand at 405.797 kb on - strand, within BPHYT_RS01785 at 405.880 kb on + strand at 405.986 kb on + strand, within BPHYT_RS01785 at 405.987 kb on - strand, within BPHYT_RS01785 at 405.987 kb on - strand, within BPHYT_RS01785 at 405.987 kb on - strand, within BPHYT_RS01785 at 406.069 kb on - strand, within BPHYT_RS01785 at 406.143 kb on + strand, within BPHYT_RS01785 at 406.143 kb on + strand, within BPHYT_RS01785 at 406.143 kb on + strand, within BPHYT_RS01785 at 406.143 kb on + strand, within BPHYT_RS01785 at 406.143 kb on + strand, within BPHYT_RS01785 at 406.144 kb on - strand, within BPHYT_RS01785 at 406.144 kb on - strand, within BPHYT_RS01785 at 406.564 kb on - strand at 406.662 kb on + strand, within BPHYT_RS01785 at 406.662 kb on + strand, within BPHYT_RS01785 at 406.662 kb on + strand, within BPHYT_RS01785 at 406.668 kb on + strand, within BPHYT_RS01785 at 406.668 kb on + strand, within BPHYT_RS01785 at 406.668 kb on + strand, within BPHYT_RS01785 at 406.668 kb on + strand, within BPHYT_RS01785 at 406.668 kb on + strand, within BPHYT_RS01785 at 406.668 kb on + strand, within BPHYT_RS01785 at 406.669 kb on - strand, within BPHYT_RS01785 at 406.669 kb on - strand, within BPHYT_RS01785 at 406.669 kb on - strand, within BPHYT_RS01785 at 406.669 kb on - strand, within BPHYT_RS01785 at 406.674 kb on + strand, within BPHYT_RS01785 at 406.675 kb on - strand, within BPHYT_RS01785 at 406.675 kb on - strand, within BPHYT_RS01785 at 406.675 kb on - strand, within BPHYT_RS01785 at 406.675 kb on - strand, within BPHYT_RS01785 at 406.688 kb on + strand, within BPHYT_RS01785 at 406.716 kb on + strand, within BPHYT_RS01785 at 406.831 kb on + strand at 406.961 kb on + strand at 406.961 kb on + strand at 407.007 kb on + strand at 407.289 kb on + strand at 407.289 kb on + strand at 407.289 kb on + strand at 407.290 kb on - strand at 407.290 kb on - strand at 407.290 kb on - strand at 407.389 kb on + strand, within BPHYT_RS01790 at 407.434 kb on - strand, within BPHYT_RS01790 at 407.462 kb on + strand, within BPHYT_RS01790 at 407.462 kb on + strand, within BPHYT_RS01790 at 407.487 kb on + strand, within BPHYT_RS01790 at 407.523 kb on + strand, within BPHYT_RS01790 at 407.523 kb on + strand, within BPHYT_RS01790 at 407.524 kb on - strand, within BPHYT_RS01790 at 407.524 kb on - strand, within BPHYT_RS01790 at 407.629 kb on - strand, within BPHYT_RS01790 at 407.629 kb on - strand, within BPHYT_RS01790 at 407.629 kb on - strand, within BPHYT_RS01790 at 407.644 kb on - strand, within BPHYT_RS01790 at 407.644 kb on - strand, within BPHYT_RS01790 at 407.752 kb on - strand, within BPHYT_RS01790 at 407.752 kb on - strand, within BPHYT_RS01790 at 407.859 kb on - strand at 407.904 kb on + strand at 407.904 kb on + strand at 407.905 kb on - strand at 407.905 kb on - strand at 407.905 kb on - strand at 407.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.064 mg/ml remove 404,588 + BPHYT_RS01775 0.34 +0.4 404,589 - BPHYT_RS01775 0.35 -1.4 404,596 + BPHYT_RS01775 0.37 +0.2 404,597 - BPHYT_RS01775 0.37 -0.2 404,705 - BPHYT_RS01775 0.68 -0.4 404,717 + BPHYT_RS01775 0.72 +0.4 404,718 - BPHYT_RS01775 0.72 -0.0 404,720 + BPHYT_RS01775 0.73 -1.2 404,721 - BPHYT_RS01775 0.73 -1.4 404,721 - BPHYT_RS01775 0.73 -0.3 404,820 - +1.2 404,867 + BPHYT_RS01780 0.15 -0.2 404,868 - BPHYT_RS01780 0.16 -0.9 404,868 - BPHYT_RS01780 0.16 +1.1 404,868 - BPHYT_RS01780 0.16 -0.1 404,876 - BPHYT_RS01780 0.18 +0.4 405,024 - BPHYT_RS01780 0.58 +0.6 405,144 - +0.9 405,146 - +0.3 405,214 + +1.0 405,214 + -1.4 405,284 - +1.3 405,325 - -0.1 405,373 + -0.0 405,373 + +0.2 405,527 + -0.9 405,797 - BPHYT_RS01785 0.17 -0.1 405,880 + +4.0 405,986 + BPHYT_RS01785 0.31 +0.5 405,987 - BPHYT_RS01785 0.31 +0.4 405,987 - BPHYT_RS01785 0.31 -0.7 405,987 - BPHYT_RS01785 0.31 -0.5 406,069 - BPHYT_RS01785 0.37 -0.1 406,143 + BPHYT_RS01785 0.42 -0.1 406,143 + BPHYT_RS01785 0.42 -0.1 406,143 + BPHYT_RS01785 0.42 -0.2 406,143 + BPHYT_RS01785 0.42 -0.5 406,143 + BPHYT_RS01785 0.42 +0.1 406,144 - BPHYT_RS01785 0.42 +0.4 406,144 - BPHYT_RS01785 0.42 -0.4 406,564 - +2.4 406,662 + BPHYT_RS01785 0.80 +0.3 406,662 + BPHYT_RS01785 0.80 -0.5 406,662 + BPHYT_RS01785 0.80 +0.1 406,668 + BPHYT_RS01785 0.80 +0.1 406,668 + BPHYT_RS01785 0.80 +0.8 406,668 + BPHYT_RS01785 0.80 -0.9 406,668 + BPHYT_RS01785 0.80 +0.9 406,668 + BPHYT_RS01785 0.80 +0.3 406,668 + BPHYT_RS01785 0.80 -0.2 406,669 - BPHYT_RS01785 0.80 -0.2 406,669 - BPHYT_RS01785 0.80 -0.6 406,669 - BPHYT_RS01785 0.80 -2.1 406,669 - BPHYT_RS01785 0.80 -0.2 406,674 + BPHYT_RS01785 0.80 -0.8 406,675 - BPHYT_RS01785 0.81 +0.9 406,675 - BPHYT_RS01785 0.81 -0.5 406,675 - BPHYT_RS01785 0.81 -1.3 406,675 - BPHYT_RS01785 0.81 +0.0 406,688 + BPHYT_RS01785 0.81 -0.3 406,716 + BPHYT_RS01785 0.83 -0.2 406,831 + -0.2 406,961 + -0.2 406,961 + +0.2 407,007 + +0.2 407,289 + +2.2 407,289 + +2.4 407,289 + +2.2 407,290 - +2.4 407,290 - +2.1 407,290 - +1.5 407,389 + BPHYT_RS01790 0.23 +2.3 407,434 - BPHYT_RS01790 0.30 +2.1 407,462 + BPHYT_RS01790 0.34 +2.3 407,462 + BPHYT_RS01790 0.34 +2.3 407,487 + BPHYT_RS01790 0.38 +2.3 407,523 + BPHYT_RS01790 0.43 +2.4 407,523 + BPHYT_RS01790 0.43 +2.3 407,524 - BPHYT_RS01790 0.43 +1.8 407,524 - BPHYT_RS01790 0.43 +2.3 407,629 - BPHYT_RS01790 0.59 +2.5 407,629 - BPHYT_RS01790 0.59 -0.0 407,629 - BPHYT_RS01790 0.59 +2.7 407,644 - BPHYT_RS01790 0.61 +1.9 407,644 - BPHYT_RS01790 0.61 +2.1 407,752 - BPHYT_RS01790 0.78 +2.1 407,752 - BPHYT_RS01790 0.78 +1.9 407,859 - +1.9 407,904 + +2.1 407,904 + +2.1 407,905 - +0.1 407,905 - +1.2 407,905 - +0.6 407,905 - +1.7
Or see this region's nucleotide sequence