Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29420 and AO356_29425 are separated by 198 nucleotides AO356_29425 and AO356_29430 are separated by 35 nucleotides AO356_29430 and AO356_29435 are separated by 23 nucleotides
AO356_29420: AO356_29420 - 1-aminocyclopropane-1-carboxylate deaminase, at 6,843,658 to 6,844,674
_29420
AO356_29425: AO356_29425 - AsnC family transcriptional regulator, at 6,844,873 to 6,845,382
_29425
AO356_29430: AO356_29430 - histidine kinase, at 6,845,418 to 6,849,140
_29430
AO356_29435: AO356_29435 - ABC transporter substrate-binding protein, at 6,849,164 to 6,850,276
_29435
Position (kb)
6845
6846
6847
6848
6849
6850 Strain fitness (log2 ratio)
-1
0
1 at 6844.506 kb on - strand, within AO356_29420 at 6844.656 kb on + strand at 6844.656 kb on + strand at 6844.771 kb on + strand at 6845.415 kb on + strand at 6845.427 kb on - strand at 6845.450 kb on + strand at 6845.450 kb on + strand at 6845.451 kb on - strand at 6845.459 kb on + strand at 6845.591 kb on + strand at 6845.754 kb on + strand at 6845.754 kb on + strand at 6845.895 kb on - strand, within AO356_29430 at 6845.911 kb on + strand, within AO356_29430 at 6845.911 kb on + strand, within AO356_29430 at 6845.912 kb on - strand, within AO356_29430 at 6846.337 kb on + strand, within AO356_29430 at 6846.338 kb on - strand, within AO356_29430 at 6846.412 kb on - strand, within AO356_29430 at 6846.563 kb on - strand, within AO356_29430 at 6846.563 kb on - strand, within AO356_29430 at 6846.590 kb on - strand, within AO356_29430 at 6846.590 kb on - strand, within AO356_29430 at 6846.743 kb on + strand, within AO356_29430 at 6846.743 kb on + strand, within AO356_29430 at 6846.744 kb on - strand, within AO356_29430 at 6846.744 kb on - strand, within AO356_29430 at 6846.934 kb on + strand, within AO356_29430 at 6847.470 kb on + strand, within AO356_29430 at 6849.015 kb on + strand at 6849.015 kb on + strand at 6849.016 kb on - strand at 6849.035 kb on - strand at 6849.252 kb on + strand at 6849.584 kb on - strand, within AO356_29435 at 6849.715 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.823 kb on - strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6850.135 kb on + strand, within AO356_29435 at 6850.136 kb on - strand, within AO356_29435
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 6,844,506 - AO356_29420 0.83 -0.9 6,844,656 + -0.7 6,844,656 + -1.1 6,844,771 + -0.1 6,845,415 + -0.3 6,845,427 - +0.8 6,845,450 + +0.2 6,845,450 + -0.5 6,845,451 - +0.7 6,845,459 + -0.4 6,845,591 + +1.0 6,845,754 + -1.2 6,845,754 + -0.1 6,845,895 - AO356_29430 0.13 -0.4 6,845,911 + AO356_29430 0.13 -0.6 6,845,911 + AO356_29430 0.13 +0.1 6,845,912 - AO356_29430 0.13 -1.2 6,846,337 + AO356_29430 0.25 -0.4 6,846,338 - AO356_29430 0.25 -1.0 6,846,412 - AO356_29430 0.27 -0.5 6,846,563 - AO356_29430 0.31 +0.1 6,846,563 - AO356_29430 0.31 -0.2 6,846,590 - AO356_29430 0.31 -0.3 6,846,590 - AO356_29430 0.31 -0.1 6,846,743 + AO356_29430 0.36 +0.2 6,846,743 + AO356_29430 0.36 -0.9 6,846,744 - AO356_29430 0.36 -0.2 6,846,744 - AO356_29430 0.36 -0.7 6,846,934 + AO356_29430 0.41 -0.2 6,847,470 + AO356_29430 0.55 +0.2 6,849,015 + +0.0 6,849,015 + +1.7 6,849,016 - -0.4 6,849,035 - +0.3 6,849,252 + +0.1 6,849,584 - AO356_29435 0.38 +0.5 6,849,715 + AO356_29435 0.50 +0.1 6,849,786 + AO356_29435 0.56 -0.5 6,849,786 + AO356_29435 0.56 +0.1 6,849,786 + AO356_29435 0.56 +0.1 6,849,823 - AO356_29435 0.59 -0.8 6,849,834 + AO356_29435 0.60 -0.6 6,849,834 + AO356_29435 0.60 -0.3 6,849,835 - AO356_29435 0.60 +0.3 6,849,835 - AO356_29435 0.60 -0.1 6,850,135 + AO356_29435 0.87 -0.3 6,850,136 - AO356_29435 0.87 +0.8
Or see this region's nucleotide sequence