Strain Fitness in Sinorhizobium meliloti 1021 around SMc03827

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03826 and SMc03827 are separated by 212 nucleotidesSMc03827 and SMc03828 are separated by 133 nucleotidesSMc03828 and SMc03829 overlap by 4 nucleotides SMc03826: SMc03826 - argininosuccinate synthase, at 3,492,455 to 3,493,672 SMc03826 SMc03827: SMc03827 - amino acid efflux transmembrane protein, at 3,493,885 to 3,494,526 SMc03827 SMc03828: SMc03828 - ABC transporter ATP-binding protein, at 3,494,660 to 3,495,454 SMc03828 SMc03829: SMc03829 - ABC transporter permease, at 3,495,451 to 3,496,329 SMc03829 Position (kb) 3493 3494 3495Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3493.053 kb on + strand, within SMc03826at 3493.053 kb on + strand, within SMc03826at 3493.482 kb on + strand, within SMc03826at 3493.482 kb on + strand, within SMc03826at 3493.483 kb on - strand, within SMc03826at 3493.746 kb on - strandat 3494.055 kb on + strand, within SMc03827at 3494.056 kb on - strand, within SMc03827at 3494.056 kb on - strand, within SMc03827at 3494.140 kb on + strand, within SMc03827at 3494.141 kb on - strand, within SMc03827at 3494.147 kb on + strand, within SMc03827at 3494.217 kb on + strand, within SMc03827at 3494.373 kb on - strand, within SMc03827at 3494.589 kb on + strandat 3495.493 kb on + strandat 3495.493 kb on + strandat 3495.493 kb on + strandat 3495.494 kb on - strandat 3495.495 kb on + strandat 3495.495 kb on + strandat 3495.495 kb on + strandat 3495.495 kb on + strandat 3495.496 kb on - strandat 3495.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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3,493,053 + SMc03826 0.49 -1.2
3,493,053 + SMc03826 0.49 -3.0
3,493,482 + SMc03826 0.84 -4.9
3,493,482 + SMc03826 0.84 -3.0
3,493,483 - SMc03826 0.84 -2.7
3,493,746 - -1.6
3,494,055 + SMc03827 0.26 +1.9
3,494,056 - SMc03827 0.27 +0.1
3,494,056 - SMc03827 0.27 +0.9
3,494,140 + SMc03827 0.40 +0.4
3,494,141 - SMc03827 0.40 +0.3
3,494,147 + SMc03827 0.41 -0.4
3,494,217 + SMc03827 0.52 +0.5
3,494,373 - SMc03827 0.76 +0.3
3,494,589 + +0.1
3,495,493 + +0.1
3,495,493 + +0.1
3,495,493 + +0.7
3,495,494 - -0.2
3,495,495 + -0.0
3,495,495 + -0.1
3,495,495 + -0.2
3,495,495 + +1.1
3,495,496 - -0.2
3,495,496 - +0.3

Or see this region's nucleotide sequence