Strain Fitness in Sinorhizobium meliloti 1021 around SMc02781

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02782 and SMc02781 are separated by 99 nucleotidesSMc02781 and SMc02780 are separated by 167 nucleotides SMc02782: SMc02782 - DNA gyrase subunit B, at 8,697 to 11,132 SMc02782 SMc02781: SMc02781 - oxidoreductase, at 11,232 to 11,828 SMc02781 SMc02780: SMc02780 - succinate-semialdehyde dehydrogenase [NADP+] protein, at 11,996 to 13,450 SMc02780 Position (kb) 11 12Strain fitness (log2 ratio) -1 0 1at 11.144 kb on - strandat 11.144 kb on - strandat 11.163 kb on + strandat 11.504 kb on + strand, within SMc02781at 11.504 kb on + strand, within SMc02781at 11.504 kb on + strand, within SMc02781at 11.504 kb on + strand, within SMc02781at 11.504 kb on + strand, within SMc02781at 11.505 kb on - strand, within SMc02781at 11.505 kb on - strand, within SMc02781at 11.506 kb on + strand, within SMc02781at 11.506 kb on + strand, within SMc02781at 11.653 kb on + strand, within SMc02781at 11.653 kb on + strand, within SMc02781at 11.810 kb on + strandat 11.810 kb on + strandat 11.810 kb on + strandat 11.811 kb on - strandat 11.811 kb on - strandat 11.811 kb on - strandat 11.842 kb on + strandat 11.842 kb on + strandat 11.855 kb on + strandat 11.855 kb on + strandat 11.855 kb on + strandat 11.856 kb on - strandat 11.899 kb on + strandat 11.899 kb on + strandat 11.899 kb on + strandat 11.899 kb on + strandat 11.900 kb on - strandat 12.326 kb on + strand, within SMc02780at 12.374 kb on + strand, within SMc02780at 12.682 kb on + strand, within SMc02780

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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11,144 - +0.1
11,144 - -0.9
11,163 + -0.5
11,504 + SMc02781 0.46 -0.3
11,504 + SMc02781 0.46 -0.7
11,504 + SMc02781 0.46 +0.3
11,504 + SMc02781 0.46 -1.0
11,504 + SMc02781 0.46 -0.1
11,505 - SMc02781 0.46 -0.2
11,505 - SMc02781 0.46 -0.3
11,506 + SMc02781 0.46 -0.9
11,506 + SMc02781 0.46 -0.3
11,653 + SMc02781 0.71 -0.2
11,653 + SMc02781 0.71 -0.8
11,810 + +1.3
11,810 + -0.3
11,810 + +0.4
11,811 - +0.5
11,811 - +0.0
11,811 - -0.3
11,842 + -0.6
11,842 + -0.5
11,855 + +0.5
11,855 + -0.0
11,855 + +0.3
11,856 - -0.5
11,899 + +0.7
11,899 + +0.9
11,899 + -0.4
11,899 + +0.4
11,900 - +0.4
12,326 + SMc02780 0.23 +0.3
12,374 + SMc02780 0.26 +0.3
12,682 + SMc02780 0.47 +0.7

Or see this region's nucleotide sequence