Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02200 and SMc02184 are separated by 136 nucleotides SMc02184 and SMc02199 are separated by 279 nucleotides SMc02199 and SMc02203 overlap by 4 nucleotides
SMc02200: SMc02200 - hypothetical protein, at 545,971 to 546,495
SMc02200
SMc02184: SMc02184 - transcriptional regulator, at 546,632 to 546,901
SMc02184
SMc02199: SMc02199 - hypothetical protein, at 547,181 to 547,675
SMc02199
SMc02203: SMc02203 - hypothetical protein, at 547,672 to 548,811
SMc02203
Position (kb) 547
548 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 546.201 kb on + strand, within SMc02200 at 546.326 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.333 kb on + strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.398 kb on - strand, within SMc02200 at 546.400 kb on + strand, within SMc02200 at 546.469 kb on + strand at 546.469 kb on + strand at 546.556 kb on + strand at 546.557 kb on - strand at 546.557 kb on - strand at 546.562 kb on - strand at 546.615 kb on + strand at 546.616 kb on - strand at 546.690 kb on + strand, within SMc02184 at 546.691 kb on - strand, within SMc02184 at 546.735 kb on - strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.783 kb on + strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.784 kb on - strand, within SMc02184 at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.895 kb on + strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.896 kb on - strand at 546.899 kb on + strand at 547.051 kb on - strand at 547.051 kb on - strand at 547.051 kb on - strand at 547.151 kb on + strand at 547.151 kb on + strand at 547.152 kb on - strand at 547.152 kb on - strand at 547.222 kb on - strand at 547.222 kb on - strand at 547.225 kb on + strand at 547.225 kb on + strand at 547.225 kb on + strand at 547.226 kb on - strand at 547.232 kb on + strand, within SMc02199 at 547.232 kb on + strand, within SMc02199 at 547.233 kb on - strand, within SMc02199 at 547.233 kb on - strand, within SMc02199 at 547.233 kb on - strand, within SMc02199 at 547.262 kb on + strand, within SMc02199 at 547.262 kb on + strand, within SMc02199 at 547.262 kb on + strand, within SMc02199 at 547.371 kb on + strand, within SMc02199 at 547.372 kb on - strand, within SMc02199 at 547.372 kb on - strand, within SMc02199 at 547.418 kb on + strand, within SMc02199 at 547.418 kb on + strand, within SMc02199 at 547.419 kb on - strand, within SMc02199 at 547.459 kb on - strand, within SMc02199 at 547.465 kb on + strand, within SMc02199 at 547.465 kb on + strand, within SMc02199 at 547.465 kb on + strand, within SMc02199 at 547.466 kb on - strand, within SMc02199 at 547.466 kb on - strand, within SMc02199 at 547.538 kb on + strand, within SMc02199 at 547.538 kb on + strand, within SMc02199 at 547.599 kb on + strand, within SMc02199 at 547.599 kb on + strand, within SMc02199 at 547.599 kb on + strand, within SMc02199 at 547.632 kb on + strand at 547.735 kb on + strand at 547.767 kb on + strand at 547.768 kb on - strand at 547.771 kb on + strand at 547.772 kb on - strand at 547.790 kb on + strand, within SMc02203 at 547.791 kb on - strand, within SMc02203 at 547.791 kb on - strand, within SMc02203 at 547.841 kb on + strand, within SMc02203 at 547.849 kb on + strand, within SMc02203 at 548.097 kb on + strand, within SMc02203 at 548.113 kb on + strand, within SMc02203 at 548.114 kb on - strand, within SMc02203 at 548.114 kb on - strand, within SMc02203 at 548.114 kb on - strand, within SMc02203 at 548.169 kb on - strand, within SMc02203 at 548.263 kb on + strand, within SMc02203 at 548.263 kb on + strand, within SMc02203 at 548.264 kb on - strand, within SMc02203 at 548.310 kb on - strand, within SMc02203 at 548.420 kb on + strand, within SMc02203 at 548.421 kb on - strand, within SMc02203 at 548.564 kb on - strand, within SMc02203 at 548.564 kb on - strand, within SMc02203 at 548.615 kb on + strand, within SMc02203 at 548.674 kb on + strand, within SMc02203 at 548.675 kb on - strand, within SMc02203
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 546,201 + SMc02200 0.44 -0.3 546,326 + SMc02200 0.68 +0.8 546,333 + SMc02200 0.69 +0.1 546,333 + SMc02200 0.69 +0.3 546,398 - SMc02200 0.81 +0.5 546,398 - SMc02200 0.81 -0.6 546,400 + SMc02200 0.82 +0.1 546,469 + +0.3 546,469 + -0.1 546,556 + -2.1 546,557 - +0.1 546,557 - +0.4 546,562 - +0.1 546,615 + -0.4 546,616 - -1.1 546,690 + SMc02184 0.21 +0.9 546,691 - SMc02184 0.22 -0.1 546,735 - SMc02184 0.38 +0.6 546,783 + SMc02184 0.56 -0.4 546,783 + SMc02184 0.56 -1.6 546,784 - SMc02184 0.56 +1.1 546,784 - SMc02184 0.56 -0.0 546,784 - SMc02184 0.56 +3.2 546,895 + +0.5 546,895 + -0.6 546,895 + +0.2 546,895 + +0.3 546,895 + -1.6 546,896 - +0.2 546,896 - +0.0 546,896 - +0.1 546,899 + -0.2 547,051 - -0.1 547,051 - -0.3 547,051 - -0.3 547,151 + +0.1 547,151 + -0.3 547,152 - +0.0 547,152 - +0.0 547,222 - -0.2 547,222 - -2.1 547,225 + -1.1 547,225 + +1.1 547,225 + +0.2 547,226 - -0.5 547,232 + SMc02199 0.10 +1.1 547,232 + SMc02199 0.10 +0.0 547,233 - SMc02199 0.11 +0.5 547,233 - SMc02199 0.11 +0.1 547,233 - SMc02199 0.11 +0.3 547,262 + SMc02199 0.16 +0.3 547,262 + SMc02199 0.16 -0.3 547,262 + SMc02199 0.16 +0.6 547,371 + SMc02199 0.38 +0.2 547,372 - SMc02199 0.39 +0.1 547,372 - SMc02199 0.39 +1.5 547,418 + SMc02199 0.48 +0.8 547,418 + SMc02199 0.48 +0.6 547,419 - SMc02199 0.48 +0.0 547,459 - SMc02199 0.56 +0.6 547,465 + SMc02199 0.57 -0.6 547,465 + SMc02199 0.57 -0.5 547,465 + SMc02199 0.57 +0.3 547,466 - SMc02199 0.58 -0.0 547,466 - SMc02199 0.58 +0.1 547,538 + SMc02199 0.72 -0.3 547,538 + SMc02199 0.72 +0.3 547,599 + SMc02199 0.84 +0.2 547,599 + SMc02199 0.84 +0.3 547,599 + SMc02199 0.84 +0.1 547,632 + -1.1 547,735 + -0.7 547,767 + +3.8 547,768 - -0.7 547,771 + +0.2 547,772 - -0.7 547,790 + SMc02203 0.10 +1.1 547,791 - SMc02203 0.10 +0.3 547,791 - SMc02203 0.10 -0.4 547,841 + SMc02203 0.15 +0.1 547,849 + SMc02203 0.16 -0.4 548,097 + SMc02203 0.37 +0.2 548,113 + SMc02203 0.39 +0.4 548,114 - SMc02203 0.39 +0.2 548,114 - SMc02203 0.39 +0.3 548,114 - SMc02203 0.39 +0.0 548,169 - SMc02203 0.44 +0.4 548,263 + SMc02203 0.52 +0.3 548,263 + SMc02203 0.52 +0.6 548,264 - SMc02203 0.52 -0.2 548,310 - SMc02203 0.56 +0.1 548,420 + SMc02203 0.66 +0.8 548,421 - SMc02203 0.66 -0.7 548,564 - SMc02203 0.78 +0.1 548,564 - SMc02203 0.78 -1.1 548,615 + SMc02203 0.83 +0.2 548,674 + SMc02203 0.88 -5.2 548,675 - SMc02203 0.88 -4.5
Or see this region's nucleotide sequence