Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00793 and SMc00794 are separated by 26 nucleotides SMc00794 and SMc00795 are separated by 524 nucleotides
SMc00793: SMc00793 - permease, at 813,623 to 814,753
SMc00793
SMc00794: SMc00794 - two-component response regulator, at 814,780 to 815,577
SMc00794
SMc00795: SMc00795 - hypothetical protein, at 816,102 to 816,350
SMc00795
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 813.794 kb on + strand, within SMc00793 at 813.794 kb on + strand, within SMc00793 at 813.795 kb on - strand at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.922 kb on - strand, within SMc00793 at 814.026 kb on + strand, within SMc00793 at 814.035 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.197 kb on + strand, within SMc00793 at 814.198 kb on - strand, within SMc00793 at 814.310 kb on - strand, within SMc00793 at 814.340 kb on + strand, within SMc00793 at 814.341 kb on - strand, within SMc00793 at 814.704 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.717 kb on - strand at 814.777 kb on + strand at 814.778 kb on - strand at 814.781 kb on + strand at 814.782 kb on - strand at 814.868 kb on - strand, within SMc00794 at 815.039 kb on + strand, within SMc00794 at 815.040 kb on - strand, within SMc00794 at 815.046 kb on + strand, within SMc00794 at 815.046 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.528 kb on + strand at 815.541 kb on - strand at 815.579 kb on + strand at 815.590 kb on - strand at 815.594 kb on + strand at 815.595 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.604 kb on - strand at 815.604 kb on - strand at 815.637 kb on + strand at 815.637 kb on + strand at 815.659 kb on + strand at 815.935 kb on - strand at 816.100 kb on + strand at 816.142 kb on + strand, within SMc00795 at 816.152 kb on - strand, within SMc00795 at 816.152 kb on - strand, within SMc00795 at 816.237 kb on + strand, within SMc00795 at 816.339 kb on + strand at 816.362 kb on - strand at 816.550 kb on + strand at 816.551 kb on - strand at 816.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 813,794 + SMc00793 0.15 +1.0 813,794 + SMc00793 0.15 -0.2 813,795 - -0.2 813,797 - SMc00793 0.15 -0.5 813,797 - SMc00793 0.15 -0.8 813,797 - SMc00793 0.15 +0.0 813,922 - SMc00793 0.26 +0.8 814,026 + SMc00793 0.36 +1.6 814,035 - SMc00793 0.36 -0.0 814,063 - SMc00793 0.39 +0.4 814,063 - SMc00793 0.39 -0.2 814,197 + SMc00793 0.51 -0.6 814,198 - SMc00793 0.51 -0.5 814,310 - SMc00793 0.61 +0.0 814,340 + SMc00793 0.63 -0.1 814,341 - SMc00793 0.63 +0.7 814,704 + -0.0 814,716 + +0.2 814,716 + -0.3 814,717 - -0.2 814,777 + -0.0 814,778 - +0.0 814,781 + -0.4 814,782 - +0.1 814,868 - SMc00794 0.11 +0.7 815,039 + SMc00794 0.32 +2.7 815,040 - SMc00794 0.33 +1.0 815,046 + SMc00794 0.33 -0.2 815,046 + SMc00794 0.33 +0.8 815,486 + SMc00794 0.88 +0.9 815,486 + SMc00794 0.88 +0.4 815,486 + SMc00794 0.88 +0.4 815,486 + SMc00794 0.88 +0.7 815,486 + SMc00794 0.88 +0.3 815,486 + SMc00794 0.88 +1.3 815,486 + +3.4 815,487 - SMc00794 0.89 +0.8 815,487 - SMc00794 0.89 +1.0 815,487 - SMc00794 0.89 +0.9 815,487 - SMc00794 0.89 +0.5 815,487 - SMc00794 0.89 +1.8 815,487 - SMc00794 0.89 +0.2 815,487 - SMc00794 0.89 +0.1 815,528 + +0.9 815,541 - +0.6 815,579 + +0.8 815,590 - +0.5 815,594 + +1.9 815,595 - -0.6 815,598 - -2.7 815,598 - -3.1 815,598 - -1.0 815,598 - -0.7 815,603 + +1.3 815,603 + +0.6 815,603 + +0.9 815,603 + +0.4 815,603 + +0.4 815,604 - -2.5 815,604 - -2.0 815,637 + +1.1 815,637 + +1.0 815,659 + +0.3 815,935 - +0.1 816,100 + -0.4 816,142 + SMc00795 0.16 -0.5 816,152 - SMc00795 0.20 -0.3 816,152 - SMc00795 0.20 +0.6 816,237 + SMc00795 0.54 -0.1 816,339 + -0.4 816,362 - +0.2 816,550 + +0.2 816,551 - -0.3 816,551 - +0.8
Or see this region's nucleotide sequence