Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21431 and SM_b21432 are separated by 2 nucleotides SM_b21432 and SM_b21433 are separated by 105 nucleotides SM_b21433 and SM_b21685 are separated by 107 nucleotides SM_b21685 and SM_b21434 are separated by 9 nucleotides
SM_b21431: SM_b21431 - hypothetical protein, at 1,361,810 to 1,362,232
_b21431
SM_b21432: SM_b21432 - iron uptake ABC transporter substrate-binding protein precursor, at 1,362,235 to 1,362,942
_b21432
SM_b21433: SM_b21433 - methyl-transferase, S-adenosyl-L-methionine (SAM)-MTase, at 1,363,048 to 1,363,857
_b21433
SM_b21685: SM_b21685 - hypothetical protein, at 1,363,965 to 1,364,120
_b21685
SM_b21434: SM_b21434 - LysR family transcriptional regulator, at 1,364,130 to 1,365,050
_b21434
Position (kb)
1363
1364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1362.093 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.126 kb on + strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.127 kb on - strand, within SM_b21431 at 1362.151 kb on + strand, within SM_b21431 at 1362.151 kb on + strand, within SM_b21431 at 1362.498 kb on - strand, within SM_b21432 at 1362.535 kb on - strand, within SM_b21432 at 1362.536 kb on + strand, within SM_b21432 at 1362.537 kb on - strand at 1362.537 kb on - strand, within SM_b21432 at 1362.684 kb on - strand, within SM_b21432 at 1362.693 kb on - strand, within SM_b21432 at 1362.779 kb on + strand, within SM_b21432 at 1362.779 kb on + strand, within SM_b21432 at 1362.779 kb on + strand, within SM_b21432 at 1362.895 kb on + strand at 1362.895 kb on + strand at 1363.003 kb on + strand at 1363.003 kb on + strand at 1363.075 kb on + strand at 1363.075 kb on + strand at 1363.102 kb on + strand at 1363.359 kb on + strand, within SM_b21433 at 1363.359 kb on + strand, within SM_b21433 at 1363.360 kb on - strand, within SM_b21433 at 1363.389 kb on + strand, within SM_b21433 at 1363.389 kb on + strand, within SM_b21433 at 1363.390 kb on - strand, within SM_b21433 at 1363.697 kb on + strand, within SM_b21433 at 1363.733 kb on + strand, within SM_b21433 at 1363.734 kb on - strand, within SM_b21433 at 1363.760 kb on + strand, within SM_b21433 at 1363.761 kb on - strand, within SM_b21433 at 1363.761 kb on - strand, within SM_b21433 at 1363.890 kb on + strand at 1363.890 kb on + strand at 1363.891 kb on - strand at 1364.042 kb on + strand, within SM_b21685 at 1364.119 kb on - strand at 1364.335 kb on - strand, within SM_b21434 at 1364.335 kb on - strand, within SM_b21434 at 1364.373 kb on - strand, within SM_b21434 at 1364.478 kb on + strand, within SM_b21434 at 1364.501 kb on - strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.676 kb on - strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.828 kb on - strand, within SM_b21434
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 1,362,093 + SM_b21431 0.67 +0.6 1,362,126 + SM_b21431 0.75 +2.1 1,362,126 + SM_b21431 0.75 -0.2 1,362,126 + SM_b21431 0.75 -0.2 1,362,126 + SM_b21431 0.75 -0.3 1,362,126 + SM_b21431 0.75 -0.2 1,362,126 + SM_b21431 0.75 +0.2 1,362,127 - SM_b21431 0.75 +0.4 1,362,127 - SM_b21431 0.75 -0.6 1,362,127 - SM_b21431 0.75 -0.5 1,362,151 + SM_b21431 0.81 +0.0 1,362,151 + SM_b21431 0.81 +0.4 1,362,498 - SM_b21432 0.37 +1.2 1,362,535 - SM_b21432 0.42 +0.2 1,362,536 + SM_b21432 0.43 -1.9 1,362,537 - +0.5 1,362,537 - SM_b21432 0.43 -0.4 1,362,684 - SM_b21432 0.63 +0.4 1,362,693 - SM_b21432 0.65 -0.5 1,362,779 + SM_b21432 0.77 -1.1 1,362,779 + SM_b21432 0.77 -1.4 1,362,779 + SM_b21432 0.77 -0.2 1,362,895 + +0.1 1,362,895 + -0.2 1,363,003 + +0.4 1,363,003 + +0.7 1,363,075 + -0.2 1,363,075 + +0.5 1,363,102 + -0.4 1,363,359 + SM_b21433 0.38 -0.3 1,363,359 + SM_b21433 0.38 -0.6 1,363,360 - SM_b21433 0.39 +0.3 1,363,389 + SM_b21433 0.42 -0.6 1,363,389 + SM_b21433 0.42 -0.2 1,363,390 - SM_b21433 0.42 -0.4 1,363,697 + SM_b21433 0.80 -1.7 1,363,733 + SM_b21433 0.85 +0.8 1,363,734 - SM_b21433 0.85 -0.3 1,363,760 + SM_b21433 0.88 -0.9 1,363,761 - SM_b21433 0.88 -1.0 1,363,761 - SM_b21433 0.88 -0.0 1,363,890 + +0.4 1,363,890 + -0.7 1,363,891 - +1.3 1,364,042 + SM_b21685 0.49 +0.7 1,364,119 - -0.5 1,364,335 - SM_b21434 0.22 -0.2 1,364,335 - SM_b21434 0.22 -0.2 1,364,373 - SM_b21434 0.26 -0.4 1,364,478 + SM_b21434 0.38 -0.0 1,364,501 - SM_b21434 0.40 -0.4 1,364,575 + SM_b21434 0.48 -0.8 1,364,575 + SM_b21434 0.48 -0.6 1,364,575 + SM_b21434 0.48 -0.1 1,364,575 + SM_b21434 0.48 +1.0 1,364,576 - SM_b21434 0.48 -1.1 1,364,576 - SM_b21434 0.48 -0.9 1,364,576 - SM_b21434 0.48 +0.4 1,364,576 - SM_b21434 0.48 +0.3 1,364,576 - SM_b21434 0.48 +0.4 1,364,576 - SM_b21434 0.48 -0.7 1,364,644 - SM_b21434 0.56 +0.0 1,364,644 - SM_b21434 0.56 -0.1 1,364,644 - SM_b21434 0.56 -1.0 1,364,676 - SM_b21434 0.59 -0.2 1,364,827 + SM_b21434 0.76 +0.1 1,364,827 + SM_b21434 0.76 +0.1 1,364,827 + SM_b21434 0.76 +0.6 1,364,828 - SM_b21434 0.76 -0.5
Or see this region's nucleotide sequence