Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20358

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20356 and SM_b20357 are separated by 24 nucleotidesSM_b20357 and SM_b20358 are separated by 8 nucleotidesSM_b20358 and SM_b20359 are separated by 116 nucleotides SM_b20356: SM_b20356 - sensory histidine kinase, at 364,660 to 367,413 _b20356 SM_b20357: SM_b20357 - histidine kinase, at 367,438 to 367,803 _b20357 SM_b20358: SM_b20358 - regulatory protein, at 367,812 to 369,374 _b20358 SM_b20359: SM_b20359 - hypothetical protein, at 369,491 to 370,786 _b20359 Position (kb) 367 368 369 370Strain fitness (log2 ratio) -2 -1 0 1at 366.875 kb on + strand, within SM_b20356at 366.876 kb on - strand, within SM_b20356at 366.876 kb on - strand, within SM_b20356at 366.975 kb on + strandat 366.976 kb on - strand, within SM_b20356at 367.094 kb on + strand, within SM_b20356at 367.095 kb on - strand, within SM_b20356at 367.417 kb on + strandat 367.593 kb on + strand, within SM_b20357at 367.593 kb on + strand, within SM_b20357at 367.593 kb on + strand, within SM_b20357at 367.664 kb on + strand, within SM_b20357at 367.800 kb on - strandat 367.802 kb on - strandat 367.802 kb on - strandat 367.802 kb on - strandat 367.802 kb on - strandat 367.946 kb on + strandat 367.946 kb on + strandat 367.946 kb on + strandat 367.946 kb on + strandat 367.947 kb on - strandat 367.947 kb on - strandat 367.947 kb on - strandat 367.948 kb on + strandat 368.104 kb on + strandat 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.158 kb on + strand, within SM_b20358at 368.612 kb on - strand, within SM_b20358at 368.644 kb on - strand, within SM_b20358at 368.747 kb on - strand, within SM_b20358at 368.949 kb on - strand, within SM_b20358at 369.001 kb on + strand, within SM_b20358at 369.001 kb on + strand, within SM_b20358at 369.001 kb on + strand, within SM_b20358at 369.002 kb on - strand, within SM_b20358at 369.012 kb on + strand, within SM_b20358at 369.012 kb on + strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.013 kb on - strand, within SM_b20358at 369.014 kb on + strand, within SM_b20358at 369.014 kb on + strand, within SM_b20358at 369.195 kb on + strand, within SM_b20358at 369.223 kb on + strandat 369.224 kb on - strandat 369.260 kb on - strandat 369.360 kb on + strandat 369.360 kb on + strandat 369.361 kb on - strandat 369.590 kb on + strandat 369.590 kb on + strandat 369.590 kb on + strandat 369.590 kb on + strandat 369.591 kb on - strandat 369.591 kb on - strandat 369.592 kb on + strandat 369.592 kb on + strandat 369.593 kb on - strandat 369.593 kb on - strandat 369.593 kb on - strandat 369.593 kb on - strandat 369.701 kb on + strand, within SM_b20359at 369.701 kb on + strand, within SM_b20359at 369.872 kb on + strand, within SM_b20359at 369.872 kb on + strand, within SM_b20359at 369.873 kb on - strand, within SM_b20359at 369.873 kb on - strand, within SM_b20359at 370.023 kb on + strand, within SM_b20359at 370.024 kb on - strand, within SM_b20359at 370.078 kb on - strand, within SM_b20359at 370.214 kb on - strand, within SM_b20359

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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366,875 + SM_b20356 0.80 -0.5
366,876 - SM_b20356 0.80 -0.2
366,876 - SM_b20356 0.80 -0.2
366,975 + -0.7
366,976 - SM_b20356 0.84 +0.7
367,094 + SM_b20356 0.88 -0.3
367,095 - SM_b20356 0.88 -0.4
367,417 + -2.0
367,593 + SM_b20357 0.42 -0.9
367,593 + SM_b20357 0.42 -0.0
367,593 + SM_b20357 0.42 -0.7
367,664 + SM_b20357 0.62 +0.2
367,800 - -0.0
367,802 - +0.2
367,802 - +0.4
367,802 - -0.1
367,802 - -0.6
367,946 + -0.0
367,946 + +0.3
367,946 + -0.4
367,946 + +0.9
367,947 - -0.1
367,947 - -0.2
367,947 - +0.4
367,948 + +0.7
368,104 + +0.6
368,104 + SM_b20358 0.19 +0.5
368,104 + SM_b20358 0.19 +0.8
368,104 + SM_b20358 0.19 +0.1
368,104 + SM_b20358 0.19 +0.1
368,104 + SM_b20358 0.19 -0.3
368,105 - SM_b20358 0.19 +0.6
368,105 - SM_b20358 0.19 +1.0
368,105 - SM_b20358 0.19 -0.1
368,105 - SM_b20358 0.19 -0.4
368,105 - SM_b20358 0.19 -1.1
368,105 - SM_b20358 0.19 +0.2
368,105 - SM_b20358 0.19 +0.3
368,105 - SM_b20358 0.19 +0.2
368,105 - SM_b20358 0.19 -0.4
368,158 + SM_b20358 0.22 +0.5
368,612 - SM_b20358 0.51 -0.2
368,644 - SM_b20358 0.53 -0.0
368,747 - SM_b20358 0.60 -1.3
368,949 - SM_b20358 0.73 +0.7
369,001 + SM_b20358 0.76 -0.2
369,001 + SM_b20358 0.76 -0.0
369,001 + SM_b20358 0.76 +0.8
369,002 - SM_b20358 0.76 -0.0
369,012 + SM_b20358 0.77 -0.1
369,012 + SM_b20358 0.77 +0.1
369,013 - SM_b20358 0.77 +0.3
369,013 - SM_b20358 0.77 -0.1
369,013 - SM_b20358 0.77 -0.3
369,013 - SM_b20358 0.77 +0.3
369,013 - SM_b20358 0.77 +0.1
369,013 - SM_b20358 0.77 +0.4
369,013 - SM_b20358 0.77 +0.7
369,013 - SM_b20358 0.77 +0.4
369,013 - SM_b20358 0.77 -0.2
369,013 - SM_b20358 0.77 +1.4
369,014 + SM_b20358 0.77 +1.7
369,014 + SM_b20358 0.77 +0.5
369,195 + SM_b20358 0.88 -0.3
369,223 + -0.7
369,224 - -0.1
369,260 - +0.1
369,360 + -0.1
369,360 + -0.0
369,361 - -0.4
369,590 + +1.0
369,590 + +0.2
369,590 + -0.7
369,590 + -0.2
369,591 - +0.3
369,591 - -1.0
369,592 + -0.2
369,592 + -1.2
369,593 - +0.4
369,593 - -0.4
369,593 - -1.1
369,593 - -0.3
369,701 + SM_b20359 0.16 +0.6
369,701 + SM_b20359 0.16 -0.6
369,872 + SM_b20359 0.29 -0.2
369,872 + SM_b20359 0.29 -0.7
369,873 - SM_b20359 0.29 +0.7
369,873 - SM_b20359 0.29 -0.1
370,023 + SM_b20359 0.41 +1.1
370,024 - SM_b20359 0.41 -0.9
370,078 - SM_b20359 0.45 +0.7
370,214 - SM_b20359 0.56 +1.2

Or see this region's nucleotide sequence