Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20269 and SM_b20270 are separated by 50 nucleotides SM_b20270 and SM_b20271 are separated by 83 nucleotides SM_b20271 and SM_b20272 are separated by 400 nucleotides
SM_b20269: SM_b20269 - hypothetical protein, at 273,692 to 275,383
_b20269
SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462
_b20270
SM_b20271: SM_b20271 - hypothetical protein, at 276,546 to 276,977
_b20271
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
Position (kb) 275
276
277 Strain fitness (log2 ratio) -2
-1
0
1
2 at 274.457 kb on + strand, within SM_b20269 at 274.457 kb on + strand, within SM_b20269 at 274.696 kb on - strand, within SM_b20269 at 274.696 kb on - strand, within SM_b20269 at 275.007 kb on + strand, within SM_b20269 at 275.233 kb on + strand at 275.264 kb on + strand at 275.264 kb on + strand at 275.264 kb on + strand at 275.265 kb on - strand at 275.265 kb on - strand at 275.265 kb on - strand at 275.302 kb on - strand at 275.302 kb on - strand at 275.689 kb on - strand, within SM_b20270 at 275.847 kb on + strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 275.848 kb on - strand, within SM_b20270 at 276.378 kb on + strand at 276.641 kb on + strand, within SM_b20271 at 277.087 kb on + strand at 277.088 kb on - strand at 277.265 kb on + strand at 277.265 kb on + strand at 277.266 kb on - strand at 277.266 kb on - strand at 277.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 274,457 + SM_b20269 0.45 +0.7 274,457 + SM_b20269 0.45 -0.3 274,696 - SM_b20269 0.59 -0.1 274,696 - SM_b20269 0.59 -1.0 275,007 + SM_b20269 0.78 +0.1 275,233 + -1.0 275,264 + -0.4 275,264 + +0.4 275,264 + +0.2 275,265 - -0.3 275,265 - +2.0 275,265 - +0.4 275,302 - +0.4 275,302 - -0.6 275,689 - SM_b20270 0.25 -1.3 275,847 + SM_b20270 0.40 -0.6 275,848 - SM_b20270 0.40 -2.6 275,848 - SM_b20270 0.40 -0.9 276,378 + -0.2 276,641 + SM_b20271 0.22 +0.1 277,087 + +0.3 277,088 - -0.4 277,265 + +0.4 277,265 + +0.0 277,266 - -0.2 277,266 - -0.2 277,394 - -0.5
Or see this region's nucleotide sequence