Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20270

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20269 and SM_b20270 are separated by 50 nucleotidesSM_b20270 and SM_b20271 are separated by 83 nucleotidesSM_b20271 and SM_b20272 are separated by 400 nucleotides SM_b20269: SM_b20269 - hypothetical protein, at 273,692 to 275,383 _b20269 SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462 _b20270 SM_b20271: SM_b20271 - hypothetical protein, at 276,546 to 276,977 _b20271 SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586 _b20272 Position (kb) 275 276 277Strain fitness (log2 ratio) -2 -1 0 1 2at 274.457 kb on + strand, within SM_b20269at 274.457 kb on + strand, within SM_b20269at 274.696 kb on - strand, within SM_b20269at 274.696 kb on - strand, within SM_b20269at 275.007 kb on + strand, within SM_b20269at 275.233 kb on + strandat 275.264 kb on + strandat 275.264 kb on + strandat 275.264 kb on + strandat 275.265 kb on - strandat 275.265 kb on - strandat 275.265 kb on - strandat 275.302 kb on - strandat 275.302 kb on - strandat 275.689 kb on - strand, within SM_b20270at 275.847 kb on + strand, within SM_b20270at 275.848 kb on - strand, within SM_b20270at 275.848 kb on - strand, within SM_b20270at 276.378 kb on + strandat 276.641 kb on + strand, within SM_b20271at 277.087 kb on + strandat 277.088 kb on - strandat 277.265 kb on + strandat 277.265 kb on + strandat 277.266 kb on - strandat 277.266 kb on - strandat 277.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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274,457 + SM_b20269 0.45 +0.7
274,457 + SM_b20269 0.45 -0.3
274,696 - SM_b20269 0.59 -0.1
274,696 - SM_b20269 0.59 -1.0
275,007 + SM_b20269 0.78 +0.1
275,233 + -1.0
275,264 + -0.4
275,264 + +0.4
275,264 + +0.2
275,265 - -0.3
275,265 - +2.0
275,265 - +0.4
275,302 - +0.4
275,302 - -0.6
275,689 - SM_b20270 0.25 -1.3
275,847 + SM_b20270 0.40 -0.6
275,848 - SM_b20270 0.40 -2.6
275,848 - SM_b20270 0.40 -0.9
276,378 + -0.2
276,641 + SM_b20271 0.22 +0.1
277,087 + +0.3
277,088 - -0.4
277,265 + +0.4
277,265 + +0.0
277,266 - -0.2
277,266 - -0.2
277,394 - -0.5

Or see this region's nucleotide sequence