Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28410 and RR42_RS28415 are separated by 5 nucleotides RR42_RS28415 and RR42_RS28420 are separated by 2 nucleotides RR42_RS28420 and RR42_RS28425 are separated by 15 nucleotides RR42_RS28425 and RR42_RS28430 are separated by 15 nucleotides
RR42_RS28410: RR42_RS28410 - dimethylmenaquinone methyltransferase, at 1,734,504 to 1,735,166
_RS28410
RR42_RS28415: RR42_RS28415 - diguanylate cyclase, at 1,735,172 to 1,735,834
_RS28415
RR42_RS28420: RR42_RS28420 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 1,735,837 to 1,736,499
_RS28420
RR42_RS28425: RR42_RS28425 - 3-hydroxybutyryl-CoA dehydratase, at 1,736,515 to 1,737,285
_RS28425
RR42_RS28430: RR42_RS28430 - phenylacetic acid degradation protein, at 1,737,301 to 1,737,723
_RS28430
Position (kb) 1735
1736
1737 Strain fitness (log2 ratio) -2
-1
0
1 at 1734.890 kb on + strand, within RR42_RS28410 at 1734.911 kb on + strand, within RR42_RS28410 at 1734.990 kb on + strand, within RR42_RS28410 at 1735.143 kb on + strand at 1735.164 kb on + strand at 1735.165 kb on - strand at 1735.320 kb on - strand, within RR42_RS28415 at 1735.331 kb on + strand, within RR42_RS28415 at 1735.332 kb on - strand, within RR42_RS28415 at 1735.370 kb on + strand, within RR42_RS28415 at 1735.371 kb on - strand, within RR42_RS28415 at 1735.411 kb on + strand, within RR42_RS28415 at 1735.412 kb on - strand, within RR42_RS28415 at 1735.533 kb on + strand, within RR42_RS28415 at 1735.533 kb on + strand, within RR42_RS28415 at 1735.608 kb on + strand, within RR42_RS28415 at 1735.609 kb on - strand, within RR42_RS28415 at 1736.048 kb on + strand, within RR42_RS28420 at 1736.048 kb on + strand, within RR42_RS28420 at 1736.049 kb on - strand, within RR42_RS28420 at 1736.049 kb on - strand, within RR42_RS28420 at 1736.049 kb on - strand, within RR42_RS28420 at 1736.278 kb on + strand, within RR42_RS28420 at 1736.299 kb on - strand, within RR42_RS28420 at 1736.369 kb on + strand, within RR42_RS28420 at 1736.370 kb on - strand, within RR42_RS28420 at 1736.405 kb on + strand, within RR42_RS28420 at 1736.405 kb on + strand, within RR42_RS28420 at 1736.485 kb on + strand at 1736.578 kb on - strand at 1736.929 kb on + strand, within RR42_RS28425 at 1736.950 kb on + strand, within RR42_RS28425 at 1736.951 kb on - strand, within RR42_RS28425 at 1737.317 kb on - strand at 1737.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,734,890 + RR42_RS28410 0.58 -0.0 1,734,911 + RR42_RS28410 0.61 +0.2 1,734,990 + RR42_RS28410 0.73 -2.2 1,735,143 + +1.1 1,735,164 + +0.2 1,735,165 - +0.6 1,735,320 - RR42_RS28415 0.22 -1.0 1,735,331 + RR42_RS28415 0.24 +0.7 1,735,332 - RR42_RS28415 0.24 -1.6 1,735,370 + RR42_RS28415 0.30 +0.0 1,735,371 - RR42_RS28415 0.30 +0.0 1,735,411 + RR42_RS28415 0.36 -0.0 1,735,412 - RR42_RS28415 0.36 -0.5 1,735,533 + RR42_RS28415 0.54 -0.2 1,735,533 + RR42_RS28415 0.54 +0.0 1,735,608 + RR42_RS28415 0.66 +0.1 1,735,609 - RR42_RS28415 0.66 -1.2 1,736,048 + RR42_RS28420 0.32 -0.2 1,736,048 + RR42_RS28420 0.32 +0.0 1,736,049 - RR42_RS28420 0.32 +0.3 1,736,049 - RR42_RS28420 0.32 -0.5 1,736,049 - RR42_RS28420 0.32 -1.0 1,736,278 + RR42_RS28420 0.67 +1.3 1,736,299 - RR42_RS28420 0.70 -2.0 1,736,369 + RR42_RS28420 0.80 +0.2 1,736,370 - RR42_RS28420 0.80 -0.7 1,736,405 + RR42_RS28420 0.86 -0.9 1,736,405 + RR42_RS28420 0.86 -0.6 1,736,485 + -0.3 1,736,578 - +0.5 1,736,929 + RR42_RS28425 0.54 -0.0 1,736,950 + RR42_RS28425 0.56 +0.0 1,736,951 - RR42_RS28425 0.57 +0.7 1,737,317 - -0.6 1,737,342 - -1.6
Or see this region's nucleotide sequence