Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27010

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27005 and RR42_RS27010 are separated by 192 nucleotidesRR42_RS27010 and RR42_RS27015 are separated by 345 nucleotides RR42_RS27005: RR42_RS27005 - hypothetical protein, at 1,412,569 to 1,412,949 _RS27005 RR42_RS27010: RR42_RS27010 - D-3-phosphoglycerate dehydrogenase, at 1,413,142 to 1,414,353 _RS27010 RR42_RS27015: RR42_RS27015 - ABC transporter substrate-binding protein, at 1,414,699 to 1,415,667 _RS27015 Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1at 1412.205 kb on + strandat 1412.277 kb on - strandat 1412.277 kb on - strandat 1412.286 kb on + strandat 1412.286 kb on + strandat 1412.286 kb on + strandat 1412.286 kb on + strandat 1412.286 kb on + strandat 1412.286 kb on + strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.287 kb on - strandat 1412.483 kb on + strandat 1413.249 kb on - strandat 1413.249 kb on - strandat 1413.612 kb on + strand, within RR42_RS27010at 1413.650 kb on + strand, within RR42_RS27010at 1413.845 kb on + strand, within RR42_RS27010at 1413.845 kb on + strand, within RR42_RS27010at 1413.845 kb on + strand, within RR42_RS27010at 1413.845 kb on + strand, within RR42_RS27010at 1413.845 kb on + strand, within RR42_RS27010at 1413.846 kb on - strand, within RR42_RS27010at 1413.846 kb on - strand, within RR42_RS27010at 1413.846 kb on - strand, within RR42_RS27010at 1413.848 kb on + strand, within RR42_RS27010at 1413.849 kb on - strand, within RR42_RS27010at 1413.849 kb on - strand, within RR42_RS27010at 1413.900 kb on + strand, within RR42_RS27010at 1414.117 kb on + strand, within RR42_RS27010at 1414.424 kb on + strandat 1414.424 kb on + strandat 1414.424 kb on + strandat 1414.425 kb on - strandat 1414.425 kb on - strandat 1414.425 kb on - strandat 1414.437 kb on + strandat 1414.702 kb on + strandat 1414.702 kb on + strandat 1414.703 kb on - strandat 1414.703 kb on - strandat 1414.703 kb on - strandat 1414.703 kb on - strandat 1414.703 kb on - strandat 1414.756 kb on + strandat 1414.756 kb on + strandat 1414.757 kb on - strandat 1414.757 kb on - strandat 1414.757 kb on - strandat 1414.807 kb on + strand, within RR42_RS27015at 1414.807 kb on + strand, within RR42_RS27015at 1414.957 kb on + strand, within RR42_RS27015at 1414.984 kb on + strand, within RR42_RS27015at 1414.985 kb on - strand, within RR42_RS27015at 1414.985 kb on - strand, within RR42_RS27015at 1415.027 kb on - strand, within RR42_RS27015at 1415.027 kb on - strand, within RR42_RS27015at 1415.027 kb on - strand, within RR42_RS27015at 1415.225 kb on + strand, within RR42_RS27015at 1415.239 kb on - strand, within RR42_RS27015at 1415.245 kb on + strand, within RR42_RS27015at 1415.245 kb on + strand, within RR42_RS27015at 1415.245 kb on + strand, within RR42_RS27015at 1415.246 kb on - strand, within RR42_RS27015at 1415.246 kb on - strand, within RR42_RS27015at 1415.246 kb on - strand, within RR42_RS27015

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,412,205 + -0.7
1,412,277 - +1.0
1,412,277 - -0.2
1,412,286 + -1.2
1,412,286 + +0.2
1,412,286 + +0.4
1,412,286 + -0.4
1,412,286 + +0.0
1,412,286 + +0.1
1,412,287 - -0.8
1,412,287 - +0.5
1,412,287 - -0.1
1,412,287 - -0.4
1,412,287 - +0.8
1,412,287 - +0.4
1,412,287 - +0.5
1,412,287 - +0.6
1,412,287 - -0.3
1,412,483 + -0.0
1,413,249 - -2.4
1,413,249 - -3.0
1,413,612 + RR42_RS27010 0.39 -1.6
1,413,650 + RR42_RS27010 0.42 -2.0
1,413,845 + RR42_RS27010 0.58 -1.9
1,413,845 + RR42_RS27010 0.58 -0.6
1,413,845 + RR42_RS27010 0.58 -1.9
1,413,845 + RR42_RS27010 0.58 -2.2
1,413,845 + RR42_RS27010 0.58 -3.0
1,413,846 - RR42_RS27010 0.58 -1.9
1,413,846 - RR42_RS27010 0.58 -1.2
1,413,846 - RR42_RS27010 0.58 -0.0
1,413,848 + RR42_RS27010 0.58 -0.0
1,413,849 - RR42_RS27010 0.58 -1.2
1,413,849 - RR42_RS27010 0.58 -1.5
1,413,900 + RR42_RS27010 0.63 -1.0
1,414,117 + RR42_RS27010 0.80 -0.8
1,414,424 + -0.4
1,414,424 + -1.6
1,414,424 + -1.4
1,414,425 - -0.7
1,414,425 - -0.4
1,414,425 - -0.4
1,414,437 + -2.4
1,414,702 + -0.1
1,414,702 + -0.5
1,414,703 - +0.3
1,414,703 - -0.6
1,414,703 - -0.1
1,414,703 - -0.6
1,414,703 - +0.1
1,414,756 + -0.5
1,414,756 + -1.6
1,414,757 - +0.1
1,414,757 - -0.4
1,414,757 - +0.0
1,414,807 + RR42_RS27015 0.11 +0.3
1,414,807 + RR42_RS27015 0.11 +1.2
1,414,957 + RR42_RS27015 0.27 +0.2
1,414,984 + RR42_RS27015 0.29 +1.0
1,414,985 - RR42_RS27015 0.30 -0.3
1,414,985 - RR42_RS27015 0.30 -0.0
1,415,027 - RR42_RS27015 0.34 +1.1
1,415,027 - RR42_RS27015 0.34 -1.4
1,415,027 - RR42_RS27015 0.34 -0.9
1,415,225 + RR42_RS27015 0.54 -2.0
1,415,239 - RR42_RS27015 0.56 -0.4
1,415,245 + RR42_RS27015 0.56 +0.3
1,415,245 + RR42_RS27015 0.56 -1.1
1,415,245 + RR42_RS27015 0.56 +0.0
1,415,246 - RR42_RS27015 0.56 -0.6
1,415,246 - RR42_RS27015 0.56 -0.0
1,415,246 - RR42_RS27015 0.56 +0.3

Or see this region's nucleotide sequence