Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27005 and RR42_RS27010 are separated by 192 nucleotides RR42_RS27010 and RR42_RS27015 are separated by 345 nucleotides
RR42_RS27005: RR42_RS27005 - hypothetical protein, at 1,412,569 to 1,412,949
_RS27005
RR42_RS27010: RR42_RS27010 - D-3-phosphoglycerate dehydrogenase, at 1,413,142 to 1,414,353
_RS27010
RR42_RS27015: RR42_RS27015 - ABC transporter substrate-binding protein, at 1,414,699 to 1,415,667
_RS27015
Position (kb)
1413
1414
1415 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1412.205 kb on + strand at 1412.277 kb on - strand at 1412.277 kb on - strand at 1412.286 kb on + strand at 1412.286 kb on + strand at 1412.286 kb on + strand at 1412.286 kb on + strand at 1412.286 kb on + strand at 1412.286 kb on + strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.287 kb on - strand at 1412.483 kb on + strand at 1413.249 kb on - strand at 1413.249 kb on - strand at 1413.612 kb on + strand, within RR42_RS27010 at 1413.650 kb on + strand, within RR42_RS27010 at 1413.845 kb on + strand, within RR42_RS27010 at 1413.845 kb on + strand, within RR42_RS27010 at 1413.845 kb on + strand, within RR42_RS27010 at 1413.845 kb on + strand, within RR42_RS27010 at 1413.845 kb on + strand, within RR42_RS27010 at 1413.846 kb on - strand, within RR42_RS27010 at 1413.846 kb on - strand, within RR42_RS27010 at 1413.846 kb on - strand, within RR42_RS27010 at 1413.848 kb on + strand, within RR42_RS27010 at 1413.849 kb on - strand, within RR42_RS27010 at 1413.849 kb on - strand, within RR42_RS27010 at 1413.900 kb on + strand, within RR42_RS27010 at 1414.117 kb on + strand, within RR42_RS27010 at 1414.424 kb on + strand at 1414.424 kb on + strand at 1414.424 kb on + strand at 1414.425 kb on - strand at 1414.425 kb on - strand at 1414.425 kb on - strand at 1414.437 kb on + strand at 1414.702 kb on + strand at 1414.702 kb on + strand at 1414.703 kb on - strand at 1414.703 kb on - strand at 1414.703 kb on - strand at 1414.703 kb on - strand at 1414.703 kb on - strand at 1414.756 kb on + strand at 1414.756 kb on + strand at 1414.757 kb on - strand at 1414.757 kb on - strand at 1414.757 kb on - strand at 1414.807 kb on + strand, within RR42_RS27015 at 1414.807 kb on + strand, within RR42_RS27015 at 1414.957 kb on + strand, within RR42_RS27015 at 1414.984 kb on + strand, within RR42_RS27015 at 1414.985 kb on - strand, within RR42_RS27015 at 1414.985 kb on - strand, within RR42_RS27015 at 1415.027 kb on - strand, within RR42_RS27015 at 1415.027 kb on - strand, within RR42_RS27015 at 1415.027 kb on - strand, within RR42_RS27015 at 1415.225 kb on + strand, within RR42_RS27015 at 1415.239 kb on - strand, within RR42_RS27015 at 1415.245 kb on + strand, within RR42_RS27015 at 1415.245 kb on + strand, within RR42_RS27015 at 1415.245 kb on + strand, within RR42_RS27015 at 1415.246 kb on - strand, within RR42_RS27015 at 1415.246 kb on - strand, within RR42_RS27015 at 1415.246 kb on - strand, within RR42_RS27015
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,412,205 + -0.7 1,412,277 - +1.0 1,412,277 - -0.2 1,412,286 + -1.2 1,412,286 + +0.2 1,412,286 + +0.4 1,412,286 + -0.4 1,412,286 + +0.0 1,412,286 + +0.1 1,412,287 - -0.8 1,412,287 - +0.5 1,412,287 - -0.1 1,412,287 - -0.4 1,412,287 - +0.8 1,412,287 - +0.4 1,412,287 - +0.5 1,412,287 - +0.6 1,412,287 - -0.3 1,412,483 + -0.0 1,413,249 - -2.4 1,413,249 - -3.0 1,413,612 + RR42_RS27010 0.39 -1.6 1,413,650 + RR42_RS27010 0.42 -2.0 1,413,845 + RR42_RS27010 0.58 -1.9 1,413,845 + RR42_RS27010 0.58 -0.6 1,413,845 + RR42_RS27010 0.58 -1.9 1,413,845 + RR42_RS27010 0.58 -2.2 1,413,845 + RR42_RS27010 0.58 -3.0 1,413,846 - RR42_RS27010 0.58 -1.9 1,413,846 - RR42_RS27010 0.58 -1.2 1,413,846 - RR42_RS27010 0.58 -0.0 1,413,848 + RR42_RS27010 0.58 -0.0 1,413,849 - RR42_RS27010 0.58 -1.2 1,413,849 - RR42_RS27010 0.58 -1.5 1,413,900 + RR42_RS27010 0.63 -1.0 1,414,117 + RR42_RS27010 0.80 -0.8 1,414,424 + -0.4 1,414,424 + -1.6 1,414,424 + -1.4 1,414,425 - -0.7 1,414,425 - -0.4 1,414,425 - -0.4 1,414,437 + -2.4 1,414,702 + -0.1 1,414,702 + -0.5 1,414,703 - +0.3 1,414,703 - -0.6 1,414,703 - -0.1 1,414,703 - -0.6 1,414,703 - +0.1 1,414,756 + -0.5 1,414,756 + -1.6 1,414,757 - +0.1 1,414,757 - -0.4 1,414,757 - +0.0 1,414,807 + RR42_RS27015 0.11 +0.3 1,414,807 + RR42_RS27015 0.11 +1.2 1,414,957 + RR42_RS27015 0.27 +0.2 1,414,984 + RR42_RS27015 0.29 +1.0 1,414,985 - RR42_RS27015 0.30 -0.3 1,414,985 - RR42_RS27015 0.30 -0.0 1,415,027 - RR42_RS27015 0.34 +1.1 1,415,027 - RR42_RS27015 0.34 -1.4 1,415,027 - RR42_RS27015 0.34 -0.9 1,415,225 + RR42_RS27015 0.54 -2.0 1,415,239 - RR42_RS27015 0.56 -0.4 1,415,245 + RR42_RS27015 0.56 +0.3 1,415,245 + RR42_RS27015 0.56 -1.1 1,415,245 + RR42_RS27015 0.56 +0.0 1,415,246 - RR42_RS27015 0.56 -0.6 1,415,246 - RR42_RS27015 0.56 -0.0 1,415,246 - RR42_RS27015 0.56 +0.3
Or see this region's nucleotide sequence