Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24100

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24090 and RR42_RS24095 are separated by 76 nucleotidesRR42_RS24095 and RR42_RS24100 are separated by 115 nucleotidesRR42_RS24100 and RR42_RS24105 are separated by 384 nucleotides RR42_RS24090: RR42_RS24090 - quinone oxidoreductase, at 729,487 to 730,479 _RS24090 RR42_RS24095: RR42_RS24095 - hypothetical protein, at 730,556 to 730,885 _RS24095 RR42_RS24100: RR42_RS24100 - hypothetical protein, at 731,001 to 731,516 _RS24100 RR42_RS24105: RR42_RS24105 - membrane protein, at 731,901 to 733,004 _RS24105 Position (kb) 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 730.026 kb on + strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.210 kb on + strand, within RR42_RS24090at 730.210 kb on + strand, within RR42_RS24090at 730.230 kb on + strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.326 kb on - strand, within RR42_RS24090at 730.326 kb on - strand, within RR42_RS24090at 730.396 kb on + strandat 730.396 kb on + strandat 730.396 kb on + strandat 730.451 kb on + strandat 730.452 kb on - strandat 730.452 kb on - strandat 730.456 kb on - strandat 730.496 kb on + strandat 730.497 kb on - strandat 730.497 kb on - strandat 730.640 kb on + strand, within RR42_RS24095at 730.640 kb on + strand, within RR42_RS24095at 730.640 kb on + strand, within RR42_RS24095at 730.641 kb on - strand, within RR42_RS24095at 730.641 kb on - strand, within RR42_RS24095at 730.654 kb on - strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.674 kb on - strand, within RR42_RS24095at 730.734 kb on + strand, within RR42_RS24095at 730.735 kb on - strand, within RR42_RS24095at 730.807 kb on + strand, within RR42_RS24095at 730.807 kb on + strand, within RR42_RS24095at 730.807 kb on + strand, within RR42_RS24095at 730.895 kb on - strandat 730.906 kb on - strandat 730.906 kb on - strandat 731.137 kb on + strand, within RR42_RS24100at 731.220 kb on + strand, within RR42_RS24100at 731.232 kb on + strand, within RR42_RS24100at 731.232 kb on + strand, within RR42_RS24100at 731.233 kb on - strand, within RR42_RS24100at 731.233 kb on - strand, within RR42_RS24100at 731.330 kb on + strand, within RR42_RS24100at 731.331 kb on - strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.458 kb on + strand, within RR42_RS24100at 731.512 kb on + strandat 731.512 kb on + strandat 731.513 kb on - strandat 731.513 kb on - strandat 731.513 kb on - strandat 731.544 kb on - strandat 731.544 kb on - strandat 731.552 kb on + strandat 731.553 kb on - strandat 731.553 kb on - strandat 731.568 kb on + strandat 731.568 kb on + strandat 731.569 kb on - strandat 731.630 kb on - strandat 731.647 kb on - strandat 731.647 kb on - strandat 731.647 kb on - strandat 731.647 kb on - strandat 731.895 kb on + strandat 731.895 kb on + strandat 731.895 kb on + strandat 731.896 kb on - strandat 731.896 kb on - strandat 731.896 kb on - strandat 731.902 kb on + strandat 731.903 kb on - strandat 731.903 kb on - strandat 732.017 kb on - strand, within RR42_RS24105at 732.017 kb on - strand, within RR42_RS24105at 732.058 kb on + strand, within RR42_RS24105at 732.058 kb on + strand, within RR42_RS24105at 732.058 kb on + strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.137 kb on + strand, within RR42_RS24105at 732.152 kb on + strand, within RR42_RS24105at 732.152 kb on + strand, within RR42_RS24105at 732.173 kb on + strand, within RR42_RS24105at 732.173 kb on - strand, within RR42_RS24105at 732.173 kb on - strand, within RR42_RS24105at 732.175 kb on + strand, within RR42_RS24105at 732.176 kb on - strand, within RR42_RS24105at 732.259 kb on + strand, within RR42_RS24105at 732.288 kb on + strand, within RR42_RS24105at 732.343 kb on + strand, within RR42_RS24105at 732.344 kb on - strand, within RR42_RS24105at 732.356 kb on + strand, within RR42_RS24105at 732.371 kb on + strand, within RR42_RS24105at 732.371 kb on + strand, within RR42_RS24105at 732.372 kb on - strand, within RR42_RS24105at 732.372 kb on - strand, within RR42_RS24105at 732.376 kb on + strand, within RR42_RS24105at 732.377 kb on - strand, within RR42_RS24105at 732.384 kb on + strand, within RR42_RS24105at 732.384 kb on + strand, within RR42_RS24105at 732.385 kb on - strand, within RR42_RS24105at 732.388 kb on - strand, within RR42_RS24105at 732.490 kb on + strand, within RR42_RS24105at 732.490 kb on + strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.494 kb on + strand, within RR42_RS24105

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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730,026 + RR42_RS24090 0.54 +0.7
730,027 - RR42_RS24090 0.54 -0.0
730,027 - RR42_RS24090 0.54 -0.2
730,027 - RR42_RS24090 0.54 -1.1
730,200 + RR42_RS24090 0.72 -0.4
730,200 + RR42_RS24090 0.72 -2.8
730,200 + RR42_RS24090 0.72 -0.7
730,210 + RR42_RS24090 0.73 -0.1
730,210 + RR42_RS24090 0.73 -0.5
730,230 + RR42_RS24090 0.75 -0.4
730,231 - RR42_RS24090 0.75 +0.4
730,231 - RR42_RS24090 0.75 -0.8
730,231 - RR42_RS24090 0.75 -0.1
730,326 - RR42_RS24090 0.84 -0.5
730,326 - RR42_RS24090 0.84 -0.4
730,396 + +0.3
730,396 + +0.2
730,396 + -0.0
730,451 + -0.2
730,452 - +0.2
730,452 - -0.3
730,456 - +0.3
730,496 + +0.4
730,497 - -0.3
730,497 - +0.1
730,640 + RR42_RS24095 0.25 +0.4
730,640 + RR42_RS24095 0.25 +1.4
730,640 + RR42_RS24095 0.25 -0.8
730,641 - RR42_RS24095 0.26 -0.0
730,641 - RR42_RS24095 0.26 +0.1
730,654 - RR42_RS24095 0.30 -0.9
730,673 + RR42_RS24095 0.35 -0.3
730,673 + RR42_RS24095 0.35 -0.4
730,673 + RR42_RS24095 0.35 -0.8
730,673 + RR42_RS24095 0.35 -0.6
730,674 - RR42_RS24095 0.36 -0.5
730,734 + RR42_RS24095 0.54 -0.5
730,735 - RR42_RS24095 0.54 -1.0
730,807 + RR42_RS24095 0.76 -0.9
730,807 + RR42_RS24095 0.76 -0.1
730,807 + RR42_RS24095 0.76 +0.3
730,895 - -1.3
730,906 - +0.3
730,906 - -0.4
731,137 + RR42_RS24100 0.26 +0.7
731,220 + RR42_RS24100 0.42 -0.9
731,232 + RR42_RS24100 0.45 -1.5
731,232 + RR42_RS24100 0.45 -0.5
731,233 - RR42_RS24100 0.45 +0.9
731,233 - RR42_RS24100 0.45 -0.1
731,330 + RR42_RS24100 0.64 +0.4
731,331 - RR42_RS24100 0.64 +0.4
731,352 + RR42_RS24100 0.68 +0.6
731,352 + RR42_RS24100 0.68 +0.3
731,352 + RR42_RS24100 0.68 -0.3
731,458 + RR42_RS24100 0.89 -0.2
731,512 + +0.4
731,512 + -0.3
731,513 - +0.0
731,513 - +0.2
731,513 - -0.1
731,544 - -0.9
731,544 - -1.2
731,552 + +1.0
731,553 - -0.3
731,553 - +1.1
731,568 + +1.8
731,568 + +0.8
731,569 - -0.7
731,630 - +0.3
731,647 - -0.1
731,647 - +1.3
731,647 - +0.8
731,647 - -0.2
731,895 + +0.7
731,895 + -0.7
731,895 + -0.7
731,896 - -0.9
731,896 - -1.1
731,896 - -0.7
731,902 + +0.0
731,903 - +1.3
731,903 - +1.3
732,017 - RR42_RS24105 0.11 +0.5
732,017 - RR42_RS24105 0.11 -0.2
732,058 + RR42_RS24105 0.14 -0.3
732,058 + RR42_RS24105 0.14 +0.0
732,058 + RR42_RS24105 0.14 +0.1
732,059 - RR42_RS24105 0.14 -1.7
732,059 - RR42_RS24105 0.14 +0.6
732,059 - RR42_RS24105 0.14 -0.0
732,059 - RR42_RS24105 0.14 +1.3
732,059 - RR42_RS24105 0.14 -1.0
732,059 - RR42_RS24105 0.14 -0.4
732,059 - RR42_RS24105 0.14 -0.2
732,137 + RR42_RS24105 0.21 -0.9
732,152 + RR42_RS24105 0.23 -0.2
732,152 + RR42_RS24105 0.23 +0.5
732,173 + RR42_RS24105 0.25 -0.1
732,173 - RR42_RS24105 0.25 -0.7
732,173 - RR42_RS24105 0.25 +0.7
732,175 + RR42_RS24105 0.25 -0.9
732,176 - RR42_RS24105 0.25 +0.3
732,259 + RR42_RS24105 0.32 -0.1
732,288 + RR42_RS24105 0.35 +0.7
732,343 + RR42_RS24105 0.40 -1.9
732,344 - RR42_RS24105 0.40 +0.1
732,356 + RR42_RS24105 0.41 -0.9
732,371 + RR42_RS24105 0.43 -1.9
732,371 + RR42_RS24105 0.43 +0.1
732,372 - RR42_RS24105 0.43 -1.1
732,372 - RR42_RS24105 0.43 +0.4
732,376 + RR42_RS24105 0.43 +0.3
732,377 - RR42_RS24105 0.43 +2.3
732,384 + RR42_RS24105 0.44 -0.2
732,384 + RR42_RS24105 0.44 +0.9
732,385 - RR42_RS24105 0.44 +1.3
732,388 - RR42_RS24105 0.44 -0.7
732,490 + RR42_RS24105 0.53 +0.0
732,490 + RR42_RS24105 0.53 +0.0
732,491 - RR42_RS24105 0.53 -0.6
732,491 - RR42_RS24105 0.53 +0.1
732,491 - RR42_RS24105 0.53 +0.4
732,491 - RR42_RS24105 0.53 +0.4
732,494 + RR42_RS24105 0.54 +0.9

Or see this region's nucleotide sequence