Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24085

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24080 and RR42_RS24085 are separated by 161 nucleotidesRR42_RS24085 and RR42_RS24090 are separated by 111 nucleotides RR42_RS24080: RR42_RS24080 - hypothetical protein, at 727,358 to 728,245 _RS24080 RR42_RS24085: RR42_RS24085 - hypothetical protein, at 728,407 to 729,375 _RS24085 RR42_RS24090: RR42_RS24090 - quinone oxidoreductase, at 729,487 to 730,479 _RS24090 Position (kb) 728 729 730Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 727.415 kb on + strandat 727.416 kb on - strandat 727.416 kb on - strandat 727.613 kb on + strand, within RR42_RS24080at 727.613 kb on + strand, within RR42_RS24080at 727.828 kb on + strand, within RR42_RS24080at 727.835 kb on + strand, within RR42_RS24080at 727.836 kb on - strand, within RR42_RS24080at 727.933 kb on + strand, within RR42_RS24080at 727.934 kb on - strand, within RR42_RS24080at 727.958 kb on - strand, within RR42_RS24080at 728.036 kb on - strand, within RR42_RS24080at 728.036 kb on - strand, within RR42_RS24080at 728.202 kb on + strandat 728.203 kb on - strandat 728.203 kb on - strandat 728.262 kb on + strandat 728.352 kb on + strandat 728.352 kb on + strandat 728.352 kb on + strandat 728.353 kb on - strandat 728.353 kb on - strandat 728.353 kb on - strandat 728.353 kb on - strandat 728.356 kb on + strandat 728.357 kb on - strandat 728.379 kb on + strandat 728.380 kb on - strandat 728.423 kb on + strandat 728.424 kb on - strandat 728.431 kb on - strandat 728.431 kb on - strandat 728.431 kb on - strandat 728.442 kb on + strandat 728.442 kb on + strandat 728.442 kb on + strandat 728.442 kb on + strandat 728.443 kb on - strandat 728.443 kb on - strandat 728.494 kb on - strandat 728.659 kb on + strand, within RR42_RS24085at 728.659 kb on + strand, within RR42_RS24085at 728.660 kb on - strand, within RR42_RS24085at 728.662 kb on - strand, within RR42_RS24085at 728.708 kb on + strand, within RR42_RS24085at 728.709 kb on - strand, within RR42_RS24085at 728.709 kb on - strand, within RR42_RS24085at 728.709 kb on - strand, within RR42_RS24085at 728.711 kb on - strand, within RR42_RS24085at 728.711 kb on - strand, within RR42_RS24085at 728.711 kb on - strand, within RR42_RS24085at 728.713 kb on - strand, within RR42_RS24085at 728.786 kb on + strand, within RR42_RS24085at 728.817 kb on + strand, within RR42_RS24085at 728.818 kb on - strand, within RR42_RS24085at 728.864 kb on - strand, within RR42_RS24085at 728.937 kb on + strand, within RR42_RS24085at 728.950 kb on + strand, within RR42_RS24085at 729.023 kb on + strand, within RR42_RS24085at 729.024 kb on - strand, within RR42_RS24085at 729.078 kb on + strand, within RR42_RS24085at 729.078 kb on + strand, within RR42_RS24085at 729.078 kb on + strand, within RR42_RS24085at 729.079 kb on - strand, within RR42_RS24085at 729.104 kb on + strand, within RR42_RS24085at 729.105 kb on - strand, within RR42_RS24085at 729.105 kb on - strand, within RR42_RS24085at 729.105 kb on - strand, within RR42_RS24085at 729.154 kb on + strand, within RR42_RS24085at 729.154 kb on + strand, within RR42_RS24085at 729.155 kb on - strand, within RR42_RS24085at 729.253 kb on + strand, within RR42_RS24085at 729.254 kb on - strand, within RR42_RS24085at 729.254 kb on - strand, within RR42_RS24085at 729.312 kb on + strandat 729.313 kb on - strandat 729.313 kb on - strandat 729.333 kb on + strandat 729.431 kb on + strandat 729.432 kb on - strandat 729.432 kb on - strandat 729.432 kb on - strandat 729.484 kb on - strandat 729.495 kb on + strandat 729.495 kb on + strandat 729.496 kb on - strandat 729.512 kb on - strandat 729.512 kb on - strandat 729.584 kb on + strandat 729.585 kb on - strandat 729.585 kb on - strandat 729.585 kb on - strandat 729.585 kb on - strandat 729.640 kb on + strand, within RR42_RS24090at 729.641 kb on - strand, within RR42_RS24090at 729.654 kb on + strand, within RR42_RS24090at 729.658 kb on + strand, within RR42_RS24090at 729.658 kb on + strand, within RR42_RS24090at 729.659 kb on - strand, within RR42_RS24090at 729.666 kb on - strand, within RR42_RS24090at 729.680 kb on + strand, within RR42_RS24090at 729.710 kb on + strand, within RR42_RS24090at 729.710 kb on + strand, within RR42_RS24090at 729.710 kb on + strand, within RR42_RS24090at 729.711 kb on - strand, within RR42_RS24090at 729.717 kb on - strand, within RR42_RS24090at 729.791 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.842 kb on - strand, within RR42_RS24090at 730.026 kb on + strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.210 kb on + strand, within RR42_RS24090at 730.210 kb on + strand, within RR42_RS24090at 730.230 kb on + strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.326 kb on - strand, within RR42_RS24090at 730.326 kb on - strand, within RR42_RS24090

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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727,415 + -0.2
727,416 - -0.3
727,416 - +0.8
727,613 + RR42_RS24080 0.29 -0.7
727,613 + RR42_RS24080 0.29 +0.5
727,828 + RR42_RS24080 0.53 -0.4
727,835 + RR42_RS24080 0.54 +0.2
727,836 - RR42_RS24080 0.54 +0.9
727,933 + RR42_RS24080 0.65 -0.6
727,934 - RR42_RS24080 0.65 +0.4
727,958 - RR42_RS24080 0.68 -0.4
728,036 - RR42_RS24080 0.76 +1.0
728,036 - RR42_RS24080 0.76 -1.0
728,202 + -0.2
728,203 - +0.2
728,203 - -0.5
728,262 + +0.8
728,352 + -0.3
728,352 + +0.2
728,352 + +0.9
728,353 - -0.3
728,353 - +0.4
728,353 - -1.2
728,353 - -0.2
728,356 + -0.1
728,357 - -0.1
728,379 + -0.1
728,380 - +0.7
728,423 + -1.2
728,424 - -0.3
728,431 - -0.2
728,431 - +2.3
728,431 - -0.2
728,442 + +0.3
728,442 + -0.2
728,442 + -0.7
728,442 + -0.3
728,443 - -0.6
728,443 - +0.5
728,494 - -0.8
728,659 + RR42_RS24085 0.26 +0.3
728,659 + RR42_RS24085 0.26 +0.8
728,660 - RR42_RS24085 0.26 -0.7
728,662 - RR42_RS24085 0.26 -0.9
728,708 + RR42_RS24085 0.31 +0.1
728,709 - RR42_RS24085 0.31 -0.5
728,709 - RR42_RS24085 0.31 -0.7
728,709 - RR42_RS24085 0.31 -0.2
728,711 - RR42_RS24085 0.31 -0.0
728,711 - RR42_RS24085 0.31 -0.2
728,711 - RR42_RS24085 0.31 -1.1
728,713 - RR42_RS24085 0.32 -0.4
728,786 + RR42_RS24085 0.39 -1.1
728,817 + RR42_RS24085 0.42 -1.0
728,818 - RR42_RS24085 0.42 +0.5
728,864 - RR42_RS24085 0.47 +0.3
728,937 + RR42_RS24085 0.55 -2.2
728,950 + RR42_RS24085 0.56 +1.6
729,023 + RR42_RS24085 0.64 +0.4
729,024 - RR42_RS24085 0.64 +0.1
729,078 + RR42_RS24085 0.69 -0.2
729,078 + RR42_RS24085 0.69 +1.1
729,078 + RR42_RS24085 0.69 -1.3
729,079 - RR42_RS24085 0.69 +0.8
729,104 + RR42_RS24085 0.72 +0.2
729,105 - RR42_RS24085 0.72 -0.1
729,105 - RR42_RS24085 0.72 +0.6
729,105 - RR42_RS24085 0.72 -1.0
729,154 + RR42_RS24085 0.77 +0.2
729,154 + RR42_RS24085 0.77 +0.8
729,155 - RR42_RS24085 0.77 -1.1
729,253 + RR42_RS24085 0.87 +1.8
729,254 - RR42_RS24085 0.87 +0.1
729,254 - RR42_RS24085 0.87 -1.1
729,312 + -0.3
729,313 - -0.8
729,313 - -0.0
729,333 + +0.1
729,431 + -0.5
729,432 - -0.0
729,432 - +0.5
729,432 - +0.7
729,484 - -1.0
729,495 + +1.3
729,495 + -0.3
729,496 - +0.5
729,512 - -0.3
729,512 - +0.7
729,584 + -1.0
729,585 - +0.3
729,585 - +0.2
729,585 - +0.6
729,585 - -0.0
729,640 + RR42_RS24090 0.15 -0.3
729,641 - RR42_RS24090 0.16 -0.7
729,654 + RR42_RS24090 0.17 -0.7
729,658 + RR42_RS24090 0.17 +1.0
729,658 + RR42_RS24090 0.17 -0.6
729,659 - RR42_RS24090 0.17 +0.1
729,666 - RR42_RS24090 0.18 +0.2
729,680 + RR42_RS24090 0.19 -0.5
729,710 + RR42_RS24090 0.22 +0.1
729,710 + RR42_RS24090 0.22 +0.1
729,710 + RR42_RS24090 0.22 +0.5
729,711 - RR42_RS24090 0.23 -0.0
729,717 - RR42_RS24090 0.23 +0.3
729,791 - RR42_RS24090 0.31 +0.1
729,822 - RR42_RS24090 0.34 +1.3
729,822 - RR42_RS24090 0.34 -0.1
729,822 - RR42_RS24090 0.34 -0.6
729,822 - RR42_RS24090 0.34 -0.7
729,822 - RR42_RS24090 0.34 -0.8
729,842 - RR42_RS24090 0.36 -0.4
730,026 + RR42_RS24090 0.54 +0.7
730,027 - RR42_RS24090 0.54 -0.0
730,027 - RR42_RS24090 0.54 -0.2
730,027 - RR42_RS24090 0.54 -1.1
730,200 + RR42_RS24090 0.72 -0.4
730,200 + RR42_RS24090 0.72 -2.8
730,200 + RR42_RS24090 0.72 -0.7
730,210 + RR42_RS24090 0.73 -0.1
730,210 + RR42_RS24090 0.73 -0.5
730,230 + RR42_RS24090 0.75 -0.4
730,231 - RR42_RS24090 0.75 +0.4
730,231 - RR42_RS24090 0.75 -0.8
730,231 - RR42_RS24090 0.75 -0.1
730,326 - RR42_RS24090 0.84 -0.5
730,326 - RR42_RS24090 0.84 -0.4

Or see this region's nucleotide sequence