Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20530 and RR42_RS20535 are separated by 568 nucleotides RR42_RS20535 and RR42_RS20540 are separated by 141 nucleotides
RR42_RS20530: RR42_RS20530 - phosphoenolpyruvate carboxykinase, at 4,448,567 to 4,450,423
_RS20530
RR42_RS20535: RR42_RS20535 - 3-phosphoglycerate dehydrogenase, at 4,450,992 to 4,452,005
_RS20535
RR42_RS20540: RR42_RS20540 - MFS transporter, at 4,452,147 to 4,453,322
_RS20540
Position (kb) 4450
4451
4452
4453 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4450.035 kb on + strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.036 kb on - strand, within RR42_RS20530 at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.278 kb on + strand at 4450.279 kb on - strand at 4450.279 kb on - strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.305 kb on + strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.306 kb on - strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.309 kb on + strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.310 kb on - strand at 4450.383 kb on - strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.423 kb on + strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.424 kb on - strand at 4450.429 kb on + strand at 4450.429 kb on + strand at 4450.430 kb on - strand at 4450.430 kb on - strand at 4450.430 kb on - strand at 4450.442 kb on - strand at 4450.587 kb on + strand at 4450.587 kb on + strand at 4450.756 kb on + strand at 4450.757 kb on - strand at 4450.824 kb on - strand at 4450.824 kb on - strand at 4450.919 kb on + strand at 4450.919 kb on + strand at 4450.920 kb on - strand at 4450.920 kb on - strand at 4450.920 kb on - strand at 4450.925 kb on + strand at 4450.926 kb on - strand at 4450.926 kb on - strand at 4450.926 kb on - strand at 4450.927 kb on + strand at 4450.981 kb on + strand at 4450.981 kb on + strand at 4451.006 kb on - strand at 4451.016 kb on + strand at 4451.017 kb on - strand at 4451.148 kb on - strand, within RR42_RS20535 at 4451.255 kb on + strand, within RR42_RS20535 at 4451.256 kb on - strand, within RR42_RS20535 at 4451.256 kb on - strand, within RR42_RS20535 at 4451.358 kb on + strand, within RR42_RS20535 at 4451.358 kb on + strand, within RR42_RS20535 at 4451.359 kb on - strand, within RR42_RS20535 at 4451.359 kb on - strand, within RR42_RS20535 at 4451.858 kb on + strand, within RR42_RS20535 at 4451.858 kb on + strand, within RR42_RS20535 at 4451.859 kb on - strand, within RR42_RS20535 at 4451.880 kb on + strand, within RR42_RS20535 at 4451.881 kb on - strand, within RR42_RS20535 at 4451.898 kb on + strand, within RR42_RS20535 at 4451.898 kb on + strand, within RR42_RS20535 at 4451.899 kb on - strand, within RR42_RS20535 at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.907 kb on + strand at 4451.908 kb on - strand at 4452.045 kb on + strand at 4452.046 kb on - strand at 4452.118 kb on + strand at 4452.119 kb on - strand at 4452.119 kb on - strand at 4452.328 kb on + strand, within RR42_RS20540 at 4452.328 kb on + strand, within RR42_RS20540 at 4452.328 kb on + strand, within RR42_RS20540 at 4452.329 kb on - strand, within RR42_RS20540 at 4452.329 kb on - strand, within RR42_RS20540 at 4452.379 kb on - strand, within RR42_RS20540 at 4452.379 kb on - strand, within RR42_RS20540 at 4452.379 kb on - strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.693 kb on + strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.694 kb on - strand, within RR42_RS20540 at 4452.803 kb on + strand, within RR42_RS20540 at 4452.804 kb on - strand, within RR42_RS20540 at 4452.804 kb on - strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.807 kb on + strand, within RR42_RS20540 at 4452.808 kb on - strand, within RR42_RS20540 at 4452.808 kb on - strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.809 kb on + strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540 at 4452.810 kb on - strand, within RR42_RS20540
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 4,450,035 + RR42_RS20530 0.79 -0.4 4,450,036 - RR42_RS20530 0.79 +0.0 4,450,036 - RR42_RS20530 0.79 -0.2 4,450,036 - RR42_RS20530 0.79 +0.4 4,450,036 - RR42_RS20530 0.79 -1.2 4,450,036 - RR42_RS20530 0.79 -0.2 4,450,036 - RR42_RS20530 0.79 +0.4 4,450,036 - RR42_RS20530 0.79 -0.8 4,450,278 + -0.2 4,450,278 + -0.1 4,450,278 + -0.8 4,450,278 + +0.0 4,450,279 - -0.7 4,450,279 - +0.4 4,450,305 + +0.8 4,450,305 + -1.6 4,450,305 + -1.0 4,450,305 + -1.1 4,450,306 - -0.3 4,450,306 - -0.3 4,450,306 - -0.5 4,450,306 - -0.6 4,450,306 - +0.9 4,450,306 - -0.8 4,450,306 - -1.2 4,450,306 - -0.6 4,450,309 + -0.1 4,450,309 + -0.5 4,450,309 + -0.2 4,450,309 + -0.8 4,450,309 + -1.0 4,450,309 + -0.0 4,450,310 - +0.9 4,450,310 - -0.2 4,450,310 - +0.6 4,450,310 - +0.8 4,450,310 - -1.4 4,450,383 - -0.1 4,450,423 + -0.3 4,450,423 + +0.8 4,450,423 + +0.0 4,450,423 + -1.3 4,450,424 - +0.3 4,450,424 - -1.4 4,450,424 - +0.5 4,450,424 - +0.3 4,450,429 + -0.8 4,450,429 + +0.2 4,450,430 - +0.6 4,450,430 - +0.7 4,450,430 - +0.3 4,450,442 - +0.1 4,450,587 + -0.8 4,450,587 + -0.3 4,450,756 + -0.2 4,450,757 - +0.3 4,450,824 - +1.0 4,450,824 - +0.4 4,450,919 + +0.3 4,450,919 + -0.3 4,450,920 - -0.1 4,450,920 - +0.3 4,450,920 - -0.1 4,450,925 + -0.5 4,450,926 - +0.4 4,450,926 - +0.7 4,450,926 - -0.4 4,450,927 + -0.5 4,450,981 + -0.0 4,450,981 + -0.9 4,451,006 - -0.2 4,451,016 + +0.6 4,451,017 - +1.5 4,451,148 - RR42_RS20535 0.15 -1.3 4,451,255 + RR42_RS20535 0.26 +0.0 4,451,256 - RR42_RS20535 0.26 -1.2 4,451,256 - RR42_RS20535 0.26 +1.0 4,451,358 + RR42_RS20535 0.36 +0.0 4,451,358 + RR42_RS20535 0.36 -0.4 4,451,359 - RR42_RS20535 0.36 +0.3 4,451,359 - RR42_RS20535 0.36 -0.1 4,451,858 + RR42_RS20535 0.85 -0.9 4,451,858 + RR42_RS20535 0.85 -0.3 4,451,859 - RR42_RS20535 0.86 -0.2 4,451,880 + RR42_RS20535 0.88 -0.7 4,451,881 - RR42_RS20535 0.88 -0.8 4,451,898 + RR42_RS20535 0.89 -0.1 4,451,898 + RR42_RS20535 0.89 -0.4 4,451,899 - RR42_RS20535 0.89 +0.1 4,451,907 + -0.4 4,451,907 + -0.5 4,451,907 + -0.7 4,451,907 + +0.5 4,451,907 + +0.3 4,451,907 + +0.0 4,451,908 - -0.6 4,452,045 + -0.2 4,452,046 - +2.6 4,452,118 + +0.6 4,452,119 - +1.4 4,452,119 - -0.4 4,452,328 + RR42_RS20540 0.15 +0.1 4,452,328 + RR42_RS20540 0.15 -1.1 4,452,328 + RR42_RS20540 0.15 -1.5 4,452,329 - RR42_RS20540 0.15 +0.0 4,452,329 - RR42_RS20540 0.15 +0.2 4,452,379 - RR42_RS20540 0.20 -0.1 4,452,379 - RR42_RS20540 0.20 -0.3 4,452,379 - RR42_RS20540 0.20 +1.0 4,452,693 + RR42_RS20540 0.46 -0.4 4,452,693 + RR42_RS20540 0.46 +0.8 4,452,693 + RR42_RS20540 0.46 +0.4 4,452,693 + RR42_RS20540 0.46 +0.7 4,452,694 - RR42_RS20540 0.47 -0.1 4,452,694 - RR42_RS20540 0.47 +0.0 4,452,694 - RR42_RS20540 0.47 +2.6 4,452,694 - RR42_RS20540 0.47 -1.2 4,452,694 - RR42_RS20540 0.47 +0.8 4,452,694 - RR42_RS20540 0.47 -0.6 4,452,803 + RR42_RS20540 0.56 -0.2 4,452,804 - RR42_RS20540 0.56 -0.3 4,452,804 - RR42_RS20540 0.56 +0.7 4,452,807 + RR42_RS20540 0.56 -0.7 4,452,807 + RR42_RS20540 0.56 -0.1 4,452,807 + RR42_RS20540 0.56 +0.3 4,452,807 + RR42_RS20540 0.56 -0.4 4,452,808 - RR42_RS20540 0.56 +0.7 4,452,808 - RR42_RS20540 0.56 +0.6 4,452,809 + RR42_RS20540 0.56 -2.7 4,452,809 + RR42_RS20540 0.56 -0.6 4,452,809 + RR42_RS20540 0.56 +0.1 4,452,809 + RR42_RS20540 0.56 -0.6 4,452,809 + RR42_RS20540 0.56 -0.3 4,452,809 + RR42_RS20540 0.56 +1.6 4,452,810 - RR42_RS20540 0.56 +0.2 4,452,810 - RR42_RS20540 0.56 +0.7 4,452,810 - RR42_RS20540 0.56 +0.6 4,452,810 - RR42_RS20540 0.56 -0.4 4,452,810 - RR42_RS20540 0.56 -0.2 4,452,810 - RR42_RS20540 0.56 -0.4 4,452,810 - RR42_RS20540 0.56 +0.4 4,452,810 - RR42_RS20540 0.56 -0.3 4,452,810 - RR42_RS20540 0.56 +0.0 4,452,810 - RR42_RS20540 0.56 -0.6 4,452,810 - RR42_RS20540 0.56 -1.2
Or see this region's nucleotide sequence