Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15765 and RR42_RS15770 are separated by 35 nucleotides RR42_RS15770 and RR42_RS15775 are separated by 37 nucleotides
RR42_RS15765: RR42_RS15765 - hypothetical protein, at 3,407,418 to 3,408,353
_RS15765
RR42_RS15770: RR42_RS15770 - hypothetical protein, at 3,408,389 to 3,409,951
_RS15770
RR42_RS15775: RR42_RS15775 - N-acetylneuraminate synthase, at 3,409,989 to 3,411,038
_RS15775
Position (kb)
3408
3409
3410 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3407.601 kb on - strand, within RR42_RS15765 at 3407.608 kb on + strand, within RR42_RS15765 at 3407.608 kb on + strand, within RR42_RS15765 at 3407.609 kb on - strand, within RR42_RS15765 at 3407.609 kb on - strand, within RR42_RS15765 at 3407.609 kb on - strand, within RR42_RS15765 at 3407.609 kb on - strand, within RR42_RS15765 at 3407.644 kb on - strand, within RR42_RS15765 at 3407.741 kb on - strand, within RR42_RS15765 at 3407.741 kb on - strand, within RR42_RS15765 at 3407.754 kb on - strand, within RR42_RS15765 at 3407.786 kb on - strand, within RR42_RS15765 at 3407.880 kb on - strand, within RR42_RS15765 at 3407.882 kb on - strand, within RR42_RS15765 at 3407.951 kb on + strand, within RR42_RS15765 at 3407.959 kb on + strand, within RR42_RS15765 at 3408.297 kb on + strand at 3408.304 kb on + strand at 3408.390 kb on + strand at 3408.390 kb on + strand at 3408.390 kb on + strand at 3408.391 kb on - strand at 3408.433 kb on - strand at 3408.645 kb on + strand, within RR42_RS15770 at 3408.645 kb on + strand, within RR42_RS15770 at 3408.681 kb on + strand, within RR42_RS15770 at 3408.681 kb on + strand, within RR42_RS15770 at 3408.708 kb on + strand, within RR42_RS15770 at 3408.990 kb on + strand, within RR42_RS15770 at 3408.990 kb on + strand, within RR42_RS15770 at 3409.239 kb on + strand, within RR42_RS15770 at 3409.335 kb on + strand, within RR42_RS15770 at 3409.335 kb on + strand, within RR42_RS15770 at 3409.417 kb on + strand, within RR42_RS15770 at 3409.798 kb on + strand at 3409.818 kb on + strand at 3409.818 kb on + strand at 3409.818 kb on + strand at 3409.819 kb on - strand at 3409.848 kb on - strand at 3409.896 kb on + strand at 3409.897 kb on - strand at 3409.927 kb on - strand at 3409.927 kb on - strand at 3409.927 kb on - strand at 3409.954 kb on - strand at 3409.954 kb on - strand at 3409.954 kb on - strand at 3409.957 kb on - strand at 3409.957 kb on - strand at 3409.957 kb on - strand at 3409.959 kb on + strand at 3409.959 kb on + strand at 3409.959 kb on + strand at 3409.959 kb on + strand at 3409.959 kb on + strand at 3409.960 kb on - strand at 3409.960 kb on - strand at 3409.960 kb on - strand at 3409.960 kb on - strand at 3410.207 kb on - strand, within RR42_RS15775 at 3410.207 kb on - strand, within RR42_RS15775 at 3410.387 kb on + strand, within RR42_RS15775 at 3410.387 kb on + strand, within RR42_RS15775 at 3410.388 kb on - strand, within RR42_RS15775 at 3410.475 kb on + strand, within RR42_RS15775 at 3410.478 kb on - strand, within RR42_RS15775 at 3410.621 kb on + strand, within RR42_RS15775 at 3410.708 kb on + strand, within RR42_RS15775 at 3410.709 kb on - strand, within RR42_RS15775 at 3410.785 kb on + strand, within RR42_RS15775 at 3410.881 kb on + strand, within RR42_RS15775 at 3410.882 kb on - strand, within RR42_RS15775
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 3,407,601 - RR42_RS15765 0.20 +1.8 3,407,608 + RR42_RS15765 0.20 -1.1 3,407,608 + RR42_RS15765 0.20 -0.0 3,407,609 - RR42_RS15765 0.20 -0.4 3,407,609 - RR42_RS15765 0.20 +0.6 3,407,609 - RR42_RS15765 0.20 -0.1 3,407,609 - RR42_RS15765 0.20 +0.2 3,407,644 - RR42_RS15765 0.24 +0.5 3,407,741 - RR42_RS15765 0.35 -0.5 3,407,741 - RR42_RS15765 0.35 +0.1 3,407,754 - RR42_RS15765 0.36 -0.3 3,407,786 - RR42_RS15765 0.39 +0.1 3,407,880 - RR42_RS15765 0.49 +0.2 3,407,882 - RR42_RS15765 0.50 +0.0 3,407,951 + RR42_RS15765 0.57 -0.6 3,407,959 + RR42_RS15765 0.58 -1.4 3,408,297 + -1.3 3,408,304 + -1.4 3,408,390 + -1.9 3,408,390 + -0.0 3,408,390 + -1.0 3,408,391 - +1.3 3,408,433 - -2.1 3,408,645 + RR42_RS15770 0.16 -0.2 3,408,645 + RR42_RS15770 0.16 -1.0 3,408,681 + RR42_RS15770 0.19 -3.0 3,408,681 + RR42_RS15770 0.19 +0.3 3,408,708 + RR42_RS15770 0.20 -1.0 3,408,990 + RR42_RS15770 0.38 -1.6 3,408,990 + RR42_RS15770 0.38 +0.1 3,409,239 + RR42_RS15770 0.54 -0.0 3,409,335 + RR42_RS15770 0.61 -0.8 3,409,335 + RR42_RS15770 0.61 -0.3 3,409,417 + RR42_RS15770 0.66 -0.2 3,409,798 + -1.1 3,409,818 + +0.0 3,409,818 + -2.2 3,409,818 + -0.8 3,409,819 - -1.2 3,409,848 - -0.7 3,409,896 + -0.1 3,409,897 - -1.8 3,409,927 - -2.1 3,409,927 - -0.6 3,409,927 - -0.8 3,409,954 - +0.0 3,409,954 - -2.4 3,409,954 - +0.4 3,409,957 - -0.3 3,409,957 - -0.6 3,409,957 - -0.5 3,409,959 + -0.2 3,409,959 + -2.1 3,409,959 + -0.0 3,409,959 + -1.6 3,409,959 + -1.0 3,409,960 - -0.1 3,409,960 - +0.0 3,409,960 - +0.5 3,409,960 - -0.1 3,410,207 - RR42_RS15775 0.21 -1.6 3,410,207 - RR42_RS15775 0.21 -1.3 3,410,387 + RR42_RS15775 0.38 -0.7 3,410,387 + RR42_RS15775 0.38 -0.7 3,410,388 - RR42_RS15775 0.38 -2.3 3,410,475 + RR42_RS15775 0.46 -0.5 3,410,478 - RR42_RS15775 0.47 -0.8 3,410,621 + RR42_RS15775 0.60 -1.1 3,410,708 + RR42_RS15775 0.68 -1.4 3,410,709 - RR42_RS15775 0.69 -1.3 3,410,785 + RR42_RS15775 0.76 -1.1 3,410,881 + RR42_RS15775 0.85 -1.7 3,410,882 - RR42_RS15775 0.85 -0.8
Or see this region's nucleotide sequence