Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15770

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15765 and RR42_RS15770 are separated by 35 nucleotidesRR42_RS15770 and RR42_RS15775 are separated by 37 nucleotides RR42_RS15765: RR42_RS15765 - hypothetical protein, at 3,407,418 to 3,408,353 _RS15765 RR42_RS15770: RR42_RS15770 - hypothetical protein, at 3,408,389 to 3,409,951 _RS15770 RR42_RS15775: RR42_RS15775 - N-acetylneuraminate synthase, at 3,409,989 to 3,411,038 _RS15775 Position (kb) 3408 3409 3410Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3407.601 kb on - strand, within RR42_RS15765at 3407.608 kb on + strand, within RR42_RS15765at 3407.608 kb on + strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.609 kb on - strand, within RR42_RS15765at 3407.644 kb on - strand, within RR42_RS15765at 3407.741 kb on - strand, within RR42_RS15765at 3407.741 kb on - strand, within RR42_RS15765at 3407.754 kb on - strand, within RR42_RS15765at 3407.786 kb on - strand, within RR42_RS15765at 3407.880 kb on - strand, within RR42_RS15765at 3407.882 kb on - strand, within RR42_RS15765at 3407.951 kb on + strand, within RR42_RS15765at 3407.959 kb on + strand, within RR42_RS15765at 3408.297 kb on + strandat 3408.304 kb on + strandat 3408.390 kb on + strandat 3408.390 kb on + strandat 3408.390 kb on + strandat 3408.391 kb on - strandat 3408.433 kb on - strandat 3408.645 kb on + strand, within RR42_RS15770at 3408.645 kb on + strand, within RR42_RS15770at 3408.681 kb on + strand, within RR42_RS15770at 3408.681 kb on + strand, within RR42_RS15770at 3408.708 kb on + strand, within RR42_RS15770at 3408.990 kb on + strand, within RR42_RS15770at 3408.990 kb on + strand, within RR42_RS15770at 3409.239 kb on + strand, within RR42_RS15770at 3409.335 kb on + strand, within RR42_RS15770at 3409.335 kb on + strand, within RR42_RS15770at 3409.417 kb on + strand, within RR42_RS15770at 3409.798 kb on + strandat 3409.818 kb on + strandat 3409.818 kb on + strandat 3409.818 kb on + strandat 3409.819 kb on - strandat 3409.848 kb on - strandat 3409.896 kb on + strandat 3409.897 kb on - strandat 3409.927 kb on - strandat 3409.927 kb on - strandat 3409.927 kb on - strandat 3409.954 kb on - strandat 3409.954 kb on - strandat 3409.954 kb on - strandat 3409.957 kb on - strandat 3409.957 kb on - strandat 3409.957 kb on - strandat 3409.959 kb on + strandat 3409.959 kb on + strandat 3409.959 kb on + strandat 3409.959 kb on + strandat 3409.959 kb on + strandat 3409.960 kb on - strandat 3409.960 kb on - strandat 3409.960 kb on - strandat 3409.960 kb on - strandat 3410.207 kb on - strand, within RR42_RS15775at 3410.207 kb on - strand, within RR42_RS15775at 3410.387 kb on + strand, within RR42_RS15775at 3410.387 kb on + strand, within RR42_RS15775at 3410.388 kb on - strand, within RR42_RS15775at 3410.475 kb on + strand, within RR42_RS15775at 3410.478 kb on - strand, within RR42_RS15775at 3410.621 kb on + strand, within RR42_RS15775at 3410.708 kb on + strand, within RR42_RS15775at 3410.709 kb on - strand, within RR42_RS15775at 3410.785 kb on + strand, within RR42_RS15775at 3410.881 kb on + strand, within RR42_RS15775at 3410.882 kb on - strand, within RR42_RS15775

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,407,601 - RR42_RS15765 0.20 +1.8
3,407,608 + RR42_RS15765 0.20 -1.1
3,407,608 + RR42_RS15765 0.20 -0.0
3,407,609 - RR42_RS15765 0.20 -0.4
3,407,609 - RR42_RS15765 0.20 +0.6
3,407,609 - RR42_RS15765 0.20 -0.1
3,407,609 - RR42_RS15765 0.20 +0.2
3,407,644 - RR42_RS15765 0.24 +0.5
3,407,741 - RR42_RS15765 0.35 -0.5
3,407,741 - RR42_RS15765 0.35 +0.1
3,407,754 - RR42_RS15765 0.36 -0.3
3,407,786 - RR42_RS15765 0.39 +0.1
3,407,880 - RR42_RS15765 0.49 +0.2
3,407,882 - RR42_RS15765 0.50 +0.0
3,407,951 + RR42_RS15765 0.57 -0.6
3,407,959 + RR42_RS15765 0.58 -1.4
3,408,297 + -1.3
3,408,304 + -1.4
3,408,390 + -1.9
3,408,390 + -0.0
3,408,390 + -1.0
3,408,391 - +1.3
3,408,433 - -2.1
3,408,645 + RR42_RS15770 0.16 -0.2
3,408,645 + RR42_RS15770 0.16 -1.0
3,408,681 + RR42_RS15770 0.19 -3.0
3,408,681 + RR42_RS15770 0.19 +0.3
3,408,708 + RR42_RS15770 0.20 -1.0
3,408,990 + RR42_RS15770 0.38 -1.6
3,408,990 + RR42_RS15770 0.38 +0.1
3,409,239 + RR42_RS15770 0.54 -0.0
3,409,335 + RR42_RS15770 0.61 -0.8
3,409,335 + RR42_RS15770 0.61 -0.3
3,409,417 + RR42_RS15770 0.66 -0.2
3,409,798 + -1.1
3,409,818 + +0.0
3,409,818 + -2.2
3,409,818 + -0.8
3,409,819 - -1.2
3,409,848 - -0.7
3,409,896 + -0.1
3,409,897 - -1.8
3,409,927 - -2.1
3,409,927 - -0.6
3,409,927 - -0.8
3,409,954 - +0.0
3,409,954 - -2.4
3,409,954 - +0.4
3,409,957 - -0.3
3,409,957 - -0.6
3,409,957 - -0.5
3,409,959 + -0.2
3,409,959 + -2.1
3,409,959 + -0.0
3,409,959 + -1.6
3,409,959 + -1.0
3,409,960 - -0.1
3,409,960 - +0.0
3,409,960 - +0.5
3,409,960 - -0.1
3,410,207 - RR42_RS15775 0.21 -1.6
3,410,207 - RR42_RS15775 0.21 -1.3
3,410,387 + RR42_RS15775 0.38 -0.7
3,410,387 + RR42_RS15775 0.38 -0.7
3,410,388 - RR42_RS15775 0.38 -2.3
3,410,475 + RR42_RS15775 0.46 -0.5
3,410,478 - RR42_RS15775 0.47 -0.8
3,410,621 + RR42_RS15775 0.60 -1.1
3,410,708 + RR42_RS15775 0.68 -1.4
3,410,709 - RR42_RS15775 0.69 -1.3
3,410,785 + RR42_RS15775 0.76 -1.1
3,410,881 + RR42_RS15775 0.85 -1.7
3,410,882 - RR42_RS15775 0.85 -0.8

Or see this region's nucleotide sequence