Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15515

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
3,348,410	-		RR42_RS15505	0.61	-0.5
3,348,489	-		RR42_RS15505	0.70	-2.2
3,348,489	-		RR42_RS15505	0.70	+0.7
3,348,489	-		RR42_RS15505	0.70	+0.2
3,348,614	+		RR42_RS15505	0.85	+0.0
3,348,615	-		RR42_RS15505	0.86	-0.1
3,348,704	+				+0.4
3,348,704	+				-1.5
3,348,704	+				+0.9
3,348,704	+				+0.2
3,348,966	-		RR42_RS15510	0.39	+0.3
3,348,974	-		RR42_RS15510	0.41	-1.0
3,349,069	+		RR42_RS15510	0.58	+0.9
3,349,170	+		RR42_RS15510	0.75	-0.1
3,349,170	+		RR42_RS15510	0.75	+1.0
3,349,171	-		RR42_RS15510	0.75	-0.2
3,349,171	-		RR42_RS15510	0.75	+0.8
3,349,231	-		RR42_RS15510	0.86	-0.9
3,349,476	-				-0.4
3,349,528	+				+1.3
3,349,529	-				-0.2
3,349,547	+				-0.1
3,349,595	+				+0.9
3,349,597	+				-0.2
3,349,635	-				-1.3
3,349,644	-				+1.2
3,349,644	-				-1.2
3,349,649	+				+0.4
3,349,649	+				+0.8
3,349,649	+				-0.6
3,349,650	-				+1.6
3,349,650	-				-0.2
3,349,650	-				-0.5
3,349,703	+				+0.9
3,349,703	+				+1.0
3,349,704	-				+1.0
3,349,785	-				+0.7
3,349,874	+		RR42_RS15515	0.11	-0.6
3,349,875	-		RR42_RS15515	0.11	-0.2
3,350,092	+		RR42_RS15515	0.15	-0.4
3,350,092	+		RR42_RS15515	0.15	-0.2
3,350,168	+		RR42_RS15515	0.17	-1.5
3,350,169	-		RR42_RS15515	0.17	+0.6
3,350,213	-		RR42_RS15515	0.18	+0.2
3,350,213	-		RR42_RS15515	0.18	-0.7
3,350,263	+		RR42_RS15515	0.19	-0.5
3,350,264	-		RR42_RS15515	0.19	+0.3
3,350,264	-		RR42_RS15515	0.19	-0.3
3,350,300	+		RR42_RS15515	0.20	-0.1
3,350,570	+		RR42_RS15515	0.25	-1.5
3,350,586	-		RR42_RS15515	0.26	+0.5
3,350,653	+		RR42_RS15515	0.27	+0.7
3,350,653	+		RR42_RS15515	0.27	+0.4
3,350,654	-		RR42_RS15515	0.27	+0.0
3,350,654	-		RR42_RS15515	0.27	-1.3
3,350,657	+		RR42_RS15515	0.27	-0.4
3,350,658	-		RR42_RS15515	0.27	-0.5
3,350,682	+		RR42_RS15515	0.28	+1.2
3,350,683	-		RR42_RS15515	0.28	+0.6
3,350,745	-		RR42_RS15515	0.29	-0.5
3,350,745	-		RR42_RS15515	0.29	+0.5
3,350,814	-		RR42_RS15515	0.30	-0.7
3,350,852	+		RR42_RS15515	0.31	-0.8
3,350,853	-		RR42_RS15515	0.31	+1.3
3,350,853	-		RR42_RS15515	0.31	-0.6
3,351,004	+		RR42_RS15515	0.34	-0.9
3,351,005	-		RR42_RS15515	0.34	-1.7
3,351,005	-		RR42_RS15515	0.34	-0.9
3,351,005	-		RR42_RS15515	0.34	-1.7
3,351,108	-		RR42_RS15515	0.36	-1.0
3,351,156	-		RR42_RS15515	0.37	-0.4
3,351,336	+		RR42_RS15515	0.41	-0.2
3,351,337	-		RR42_RS15515	0.41	+0.4
3,351,570	-		RR42_RS15515	0.46	+1.9
3,351,678	+		RR42_RS15515	0.48	+0.3
3,351,678	+		RR42_RS15515	0.48	-1.0
3,351,740	+		RR42_RS15515	0.50	+0.0
3,351,758	-		RR42_RS15515	0.50	-0.4
3,351,818	+		RR42_RS15515	0.51	-1.2
3,351,818	+		RR42_RS15515	0.51	+0.4
3,351,818	+		RR42_RS15515	0.51	-1.7
3,351,869	+		RR42_RS15515	0.52	+0.5
3,351,870	-		RR42_RS15515	0.52	-1.3
3,351,870	-		RR42_RS15515	0.52	-0.0
3,351,882	-		RR42_RS15515	0.53	-0.3
3,351,956	-		RR42_RS15515	0.54	-0.7
3,351,987	-		RR42_RS15515	0.55	+0.9
3,352,034	+		RR42_RS15515	0.56	+0.5
3,352,034	+		RR42_RS15515	0.56	+0.0
3,352,035	-		RR42_RS15515	0.56	+0.2
3,352,035	-		RR42_RS15515	0.56	-1.0
3,352,035	-		RR42_RS15515	0.56	+1.4
3,352,155	-		RR42_RS15515	0.58	-0.7
3,352,155	-		RR42_RS15515	0.58	-1.2
3,352,155	-		RR42_RS15515	0.58	+0.8
3,352,160	+		RR42_RS15515	0.58	+0.1
3,352,160	+		RR42_RS15515	0.58	-0.3
3,352,283	+		RR42_RS15515	0.61	+0.4
3,352,283	+		RR42_RS15515	0.61	-0.3
3,352,430	+		RR42_RS15515	0.64	-0.3
3,352,430	+		RR42_RS15515	0.64	-0.3
3,352,430	+		RR42_RS15515	0.64	+0.6
3,352,430	+		RR42_RS15515	0.64	+0.0
3,352,430	+		RR42_RS15515	0.64	-0.7
3,352,430	+		RR42_RS15515	0.64	-0.4
3,352,493	+		RR42_RS15515	0.65	-0.1
3,352,494	-		RR42_RS15515	0.65	+1.5
3,352,525	-		RR42_RS15515	0.66	-1.2
3,352,643	+		RR42_RS15515	0.68	-1.0
3,352,643	+		RR42_RS15515	0.68	+0.6
3,352,644	-		RR42_RS15515	0.68	-1.2
3,352,644	-		RR42_RS15515	0.68	-0.0
3,352,727	+		RR42_RS15515	0.70	-0.0
3,352,727	+		RR42_RS15515	0.70	+1.8
3,352,727	+		RR42_RS15515	0.70	-0.0
3,352,727	+		RR42_RS15515	0.70	-1.4
3,352,728	-		RR42_RS15515	0.70	+0.1
3,352,839	-		RR42_RS15515	0.72	-0.3
3,352,872	-		RR42_RS15515	0.73	+0.9
3,352,883	+		RR42_RS15515	0.73	+1.2
3,352,883	+		RR42_RS15515	0.73	-1.3
3,352,883	+		RR42_RS15515	0.73	-0.3
3,352,883	+		RR42_RS15515	0.73	-1.0
3,352,883	+		RR42_RS15515	0.73	-0.5
3,352,884	-		RR42_RS15515	0.73	-0.8
3,352,884	-		RR42_RS15515	0.73	-2.0
3,352,884	-		RR42_RS15515	0.73	-1.3
3,352,884	-		RR42_RS15515	0.73	-0.3
3,352,886	+		RR42_RS15515	0.73	-0.0
3,352,982	+		RR42_RS15515	0.75	+0.5
3,352,982	+		RR42_RS15515	0.75	-0.2
3,352,982	+		RR42_RS15515	0.75	-0.2
3,352,982	+		RR42_RS15515	0.75	+0.3
3,352,983	-		RR42_RS15515	0.75	-0.3
3,352,983	-		RR42_RS15515	0.75	+0.6
3,352,983	-		RR42_RS15515	0.75	+0.5
3,352,983	-		RR42_RS15515	0.75	+0.4
3,353,081	+		RR42_RS15515	0.77	-0.7
3,353,082	-		RR42_RS15515	0.77	+1.5
3,353,083	+		RR42_RS15515	0.77	+1.1
3,353,083	+		RR42_RS15515	0.77	-1.9
3,353,083	+		RR42_RS15515	0.77	-0.2
3,353,084	-		RR42_RS15515	0.77	-3.4
3,353,084	-		RR42_RS15515	0.77	+0.1
3,353,084	-		RR42_RS15515	0.77	+0.1
3,353,151	-		RR42_RS15515	0.79	-0.9
3,353,174	+		RR42_RS15515	0.79	+0.4
3,353,180	+		RR42_RS15515	0.79	-0.2
3,353,237	+		RR42_RS15515	0.81	+0.7
3,353,237	+		RR42_RS15515	0.81	-0.8
3,353,238	-		RR42_RS15515	0.81	-0.1
3,353,510	+		RR42_RS15515	0.86	-0.4
3,353,564	-		RR42_RS15515	0.87	-1.3
3,353,672	+		RR42_RS15515	0.90	-0.6
3,353,673	-		RR42_RS15515	0.90	-0.4
3,353,684	+		RR42_RS15515	0.90	-0.4
3,353,685	-		RR42_RS15515	0.90	-1.3
3,353,685	-		RR42_RS15515	0.90	-0.7
3,353,714	+				+0.3
3,353,715	-				-0.0
3,353,741	+				-0.4
3,353,742	-				-0.0
3,353,792	+				-1.3
3,353,792	+				-1.0
3,353,818	+				-0.0
3,353,818	+				-0.7
3,353,819	-				-0.1
3,353,819	-				-0.6
3,353,934	+				-0.5
3,353,935	-				-0.3
3,354,028	+				-0.3
3,354,028	+				-1.0
3,354,029	-				+0.1
3,354,180	+				-0.9
3,354,180	+				-0.7
3,354,181	-				-0.7
3,354,181	-				+0.7
3,354,201	+				-1.0
3,354,218	+				+0.8
3,354,219	-				+0.4
3,354,219	-				-0.1
3,354,219	-				-0.7
3,354,249	+				+1.2
3,354,325	+		RR42_RS15520	0.27	+0.3
3,354,325	+		RR42_RS15520	0.27	+0.1
3,354,326	-		RR42_RS15520	0.27	-0.4
3,354,326	-		RR42_RS15520	0.27	-1.3
3,354,397	+		RR42_RS15520	0.44	+0.3
3,354,415	+		RR42_RS15520	0.48	+0.2
3,354,415	+		RR42_RS15520	0.48	+0.6
3,354,481	+		RR42_RS15520	0.63	-0.1
3,354,482	-		RR42_RS15520	0.63	+1.3
3,354,526	+		RR42_RS15520	0.74	+0.9
3,354,526	+		RR42_RS15520	0.74	+0.2
3,354,527	-		RR42_RS15520	0.74	+0.2
3,354,527	-		RR42_RS15520	0.74	+0.5
3,354,527	-		RR42_RS15520	0.74	-0.3
3,354,715	+				-0.2
3,354,716	-				-0.7
3,354,756	-				-1.3
3,354,790	+				-1.5
3,354,998	-		RR42_RS15525	0.39	-0.0