Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11570 and RR42_RS11575 are separated by 332 nucleotides RR42_RS11575 and RR42_RS11580 are separated by 92 nucleotides RR42_RS11580 and RR42_RS11585 are separated by 323 nucleotides RR42_RS11585 and RR42_RS11590 are separated by 32 nucleotides
RR42_RS11570: RR42_RS11570 - magnesium transporter MgtC, at 2,478,313 to 2,478,633
_RS11570
RR42_RS11575: RR42_RS11575 - hypothetical protein, at 2,478,966 to 2,479,154
_RS11575
RR42_RS11580: RR42_RS11580 - hypothetical protein, at 2,479,247 to 2,480,086
_RS11580
RR42_RS11585: RR42_RS11585 - phosphoribosyl transferase, at 2,480,410 to 2,481,036
_RS11585
RR42_RS11590: RR42_RS11590 - nitroreductase, at 2,481,069 to 2,481,641
_RS11590
Position (kb)
2479
2480
2481 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2478.250 kb on + strand at 2478.625 kb on + strand at 2478.694 kb on + strand at 2478.883 kb on + strand at 2478.883 kb on + strand at 2478.883 kb on + strand at 2478.884 kb on - strand at 2478.884 kb on - strand at 2478.884 kb on - strand at 2478.884 kb on - strand at 2478.886 kb on - strand at 2478.912 kb on + strand at 2479.177 kb on + strand at 2479.338 kb on + strand, within RR42_RS11580 at 2479.894 kb on - strand, within RR42_RS11580 at 2479.918 kb on - strand, within RR42_RS11580 at 2480.061 kb on - strand at 2480.061 kb on - strand at 2480.061 kb on - strand at 2480.086 kb on + strand at 2480.087 kb on - strand at 2480.092 kb on + strand at 2480.092 kb on + strand at 2480.293 kb on - strand at 2480.293 kb on - strand at 2480.528 kb on + strand, within RR42_RS11585 at 2480.529 kb on - strand, within RR42_RS11585 at 2480.729 kb on - strand, within RR42_RS11585 at 2480.765 kb on + strand, within RR42_RS11585 at 2480.765 kb on + strand, within RR42_RS11585 at 2480.765 kb on + strand, within RR42_RS11585 at 2480.766 kb on - strand, within RR42_RS11585 at 2480.766 kb on - strand, within RR42_RS11585 at 2480.766 kb on - strand, within RR42_RS11585 at 2480.796 kb on - strand, within RR42_RS11585 at 2480.796 kb on - strand, within RR42_RS11585 at 2481.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,478,250 + -0.1 2,478,625 + +0.5 2,478,694 + -0.2 2,478,883 + -1.1 2,478,883 + +0.1 2,478,883 + -0.4 2,478,884 - -0.5 2,478,884 - +3.2 2,478,884 - -0.7 2,478,884 - -0.4 2,478,886 - +0.7 2,478,912 + -0.9 2,479,177 + +1.4 2,479,338 + RR42_RS11580 0.11 -0.6 2,479,894 - RR42_RS11580 0.77 -2.0 2,479,918 - RR42_RS11580 0.80 -0.5 2,480,061 - +0.2 2,480,061 - +0.5 2,480,061 - +2.2 2,480,086 + +0.1 2,480,087 - -0.7 2,480,092 + -0.2 2,480,092 + -0.7 2,480,293 - +0.1 2,480,293 - -0.6 2,480,528 + RR42_RS11585 0.19 +0.2 2,480,529 - RR42_RS11585 0.19 -1.7 2,480,729 - RR42_RS11585 0.51 +0.4 2,480,765 + RR42_RS11585 0.57 +1.1 2,480,765 + RR42_RS11585 0.57 -0.5 2,480,765 + RR42_RS11585 0.57 -0.7 2,480,766 - RR42_RS11585 0.57 +0.3 2,480,766 - RR42_RS11585 0.57 +1.4 2,480,766 - RR42_RS11585 0.57 -0.0 2,480,796 - RR42_RS11585 0.62 +0.9 2,480,796 - RR42_RS11585 0.62 +1.3 2,481,061 - +0.3
Or see this region's nucleotide sequence