Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04335

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04325 and RR42_RS04330 are separated by 23 nucleotidesRR42_RS04330 and RR42_RS04335 are separated by 236 nucleotidesRR42_RS04335 and RR42_RS04340 are separated by 201 nucleotides RR42_RS04325: RR42_RS04325 - membrane protein, at 961,546 to 962,184 _RS04325 RR42_RS04330: RR42_RS04330 - lipoprotein, at 962,208 to 962,612 _RS04330 RR42_RS04335: RR42_RS04335 - iron deficiency-induced protein A, at 962,849 to 963,892 _RS04335 RR42_RS04340: RR42_RS04340 - hypothetical protein, at 964,094 to 964,774 _RS04340 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2 3at 962.657 kb on + strandat 962.703 kb on - strandat 962.703 kb on - strandat 962.717 kb on - strandat 962.777 kb on + strandat 962.823 kb on + strandat 962.823 kb on + strandat 962.823 kb on + strandat 962.857 kb on - strandat 962.857 kb on - strandat 962.954 kb on + strand, within RR42_RS04335at 962.970 kb on - strand, within RR42_RS04335at 962.990 kb on + strand, within RR42_RS04335at 962.991 kb on - strand, within RR42_RS04335at 963.200 kb on + strand, within RR42_RS04335at 963.200 kb on + strand, within RR42_RS04335at 963.257 kb on + strand, within RR42_RS04335at 963.258 kb on - strand, within RR42_RS04335at 963.259 kb on + strand, within RR42_RS04335at 963.260 kb on - strand, within RR42_RS04335at 963.260 kb on - strand, within RR42_RS04335at 963.296 kb on + strand, within RR42_RS04335at 963.360 kb on - strand, within RR42_RS04335at 963.527 kb on + strand, within RR42_RS04335at 963.527 kb on + strand, within RR42_RS04335at 963.528 kb on - strand, within RR42_RS04335at 963.530 kb on + strand, within RR42_RS04335at 963.530 kb on + strand, within RR42_RS04335at 963.530 kb on + strand, within RR42_RS04335at 963.530 kb on + strand, within RR42_RS04335at 963.531 kb on - strand, within RR42_RS04335at 963.531 kb on - strand, within RR42_RS04335at 963.531 kb on - strand, within RR42_RS04335at 963.699 kb on - strand, within RR42_RS04335at 963.726 kb on - strand, within RR42_RS04335at 963.884 kb on + strandat 963.884 kb on + strandat 963.885 kb on - strandat 963.885 kb on - strandat 963.891 kb on - strandat 963.891 kb on - strandat 963.891 kb on - strandat 964.075 kb on + strandat 964.096 kb on - strandat 964.275 kb on + strand, within RR42_RS04340at 964.346 kb on + strand, within RR42_RS04340at 964.346 kb on + strand, within RR42_RS04340at 964.347 kb on - strand, within RR42_RS04340at 964.401 kb on + strand, within RR42_RS04340at 964.402 kb on - strand, within RR42_RS04340at 964.402 kb on - strand, within RR42_RS04340at 964.546 kb on + strand, within RR42_RS04340at 964.546 kb on + strand, within RR42_RS04340at 964.546 kb on + strand, within RR42_RS04340at 964.546 kb on + strand, within RR42_RS04340at 964.546 kb on + strand, within RR42_RS04340at 964.546 kb on + strand, within RR42_RS04340at 964.774 kb on + strandat 964.774 kb on + strandat 964.774 kb on + strandat 964.774 kb on + strandat 964.774 kb on + strandat 964.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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962,657 + -0.7
962,703 - -1.3
962,703 - -0.5
962,717 - +1.3
962,777 + -0.0
962,823 + +0.3
962,823 + -1.7
962,823 + -0.2
962,857 - -0.1
962,857 - +0.8
962,954 + RR42_RS04335 0.10 -0.9
962,970 - RR42_RS04335 0.12 -0.1
962,990 + RR42_RS04335 0.14 -0.1
962,991 - RR42_RS04335 0.14 -0.6
963,200 + RR42_RS04335 0.34 -0.4
963,200 + RR42_RS04335 0.34 -2.0
963,257 + RR42_RS04335 0.39 -0.8
963,258 - RR42_RS04335 0.39 -0.7
963,259 + RR42_RS04335 0.39 +0.1
963,260 - RR42_RS04335 0.39 -0.3
963,260 - RR42_RS04335 0.39 -0.5
963,296 + RR42_RS04335 0.43 +0.3
963,360 - RR42_RS04335 0.49 +0.7
963,527 + RR42_RS04335 0.65 -0.5
963,527 + RR42_RS04335 0.65 +0.1
963,528 - RR42_RS04335 0.65 -0.9
963,530 + RR42_RS04335 0.65 -0.6
963,530 + RR42_RS04335 0.65 +0.5
963,530 + RR42_RS04335 0.65 +0.3
963,530 + RR42_RS04335 0.65 +2.8
963,531 - RR42_RS04335 0.65 +0.5
963,531 - RR42_RS04335 0.65 +0.3
963,531 - RR42_RS04335 0.65 -1.3
963,699 - RR42_RS04335 0.81 +0.4
963,726 - RR42_RS04335 0.84 +2.8
963,884 + -1.7
963,884 + +0.2
963,885 - -0.3
963,885 - +0.3
963,891 - -0.1
963,891 - -1.7
963,891 - -1.5
964,075 + +0.6
964,096 - -1.7
964,275 + RR42_RS04340 0.27 -0.3
964,346 + RR42_RS04340 0.37 +0.2
964,346 + RR42_RS04340 0.37 +0.3
964,347 - RR42_RS04340 0.37 -0.8
964,401 + RR42_RS04340 0.45 -0.3
964,402 - RR42_RS04340 0.45 +0.3
964,402 - RR42_RS04340 0.45 +0.1
964,546 + RR42_RS04340 0.66 -0.5
964,546 + RR42_RS04340 0.66 +0.7
964,546 + RR42_RS04340 0.66 +0.1
964,546 + RR42_RS04340 0.66 -0.0
964,546 + RR42_RS04340 0.66 -0.4
964,546 + RR42_RS04340 0.66 -0.4
964,774 + -0.7
964,774 + +1.4
964,774 + +0.0
964,774 + +0.2
964,774 + -1.7
964,774 - +0.1

Or see this region's nucleotide sequence