Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4937 and Psyr_4938 overlap by 4 nucleotides Psyr_4938 and Psyr_4939 overlap by 14 nucleotides
Psyr_4937: Psyr_4937 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,852,145 to 5,853,959
_4937
Psyr_4938: Psyr_4938 - Helix-turn-helix, Fis-type, at 5,853,956 to 5,855,347
_4938
Psyr_4939: Psyr_4939 - conserved hypothetical protein, at 5,855,334 to 5,855,807
_4939
Position (kb) 5853
5854
5855
5856 Strain fitness (log2 ratio) -1
0
1
2 at 5853.069 kb on + strand, within Psyr_4937 at 5853.070 kb on - strand, within Psyr_4937 at 5853.676 kb on + strand, within Psyr_4937 at 5853.677 kb on - strand, within Psyr_4937 at 5853.712 kb on - strand, within Psyr_4937 at 5853.712 kb on - strand, within Psyr_4937 at 5853.819 kb on - strand at 5854.068 kb on + strand at 5854.068 kb on + strand at 5854.068 kb on + strand at 5854.068 kb on + strand at 5854.069 kb on - strand at 5854.236 kb on + strand, within Psyr_4938 at 5854.236 kb on + strand, within Psyr_4938 at 5854.236 kb on + strand, within Psyr_4938 at 5854.236 kb on + strand, within Psyr_4938 at 5854.236 kb on + strand, within Psyr_4938 at 5854.237 kb on - strand, within Psyr_4938 at 5854.237 kb on - strand, within Psyr_4938 at 5854.237 kb on - strand, within Psyr_4938 at 5854.237 kb on - strand, within Psyr_4938 at 5854.237 kb on - strand, within Psyr_4938 at 5854.694 kb on - strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.883 kb on + strand, within Psyr_4938 at 5854.884 kb on - strand, within Psyr_4938 at 5854.884 kb on - strand, within Psyr_4938 at 5854.884 kb on - strand, within Psyr_4938 at 5854.884 kb on - strand, within Psyr_4938 at 5854.884 kb on - strand, within Psyr_4938 at 5854.884 kb on - strand, within Psyr_4938 at 5854.884 kb on - strand, within Psyr_4938 at 5854.964 kb on + strand, within Psyr_4938 at 5854.965 kb on - strand, within Psyr_4938 at 5854.965 kb on - strand, within Psyr_4938 at 5855.044 kb on + strand, within Psyr_4938 at 5855.044 kb on + strand, within Psyr_4938 at 5855.044 kb on + strand, within Psyr_4938 at 5855.045 kb on - strand, within Psyr_4938 at 5855.045 kb on - strand, within Psyr_4938 at 5855.045 kb on - strand, within Psyr_4938 at 5855.045 kb on - strand, within Psyr_4938 at 5855.517 kb on + strand, within Psyr_4939 at 5855.517 kb on + strand, within Psyr_4939 at 5855.518 kb on - strand, within Psyr_4939 at 5855.591 kb on + strand, within Psyr_4939 at 5855.592 kb on - strand, within Psyr_4939 at 5855.592 kb on - strand, within Psyr_4939 at 5855.700 kb on + strand, within Psyr_4939 at 5855.701 kb on - strand, within Psyr_4939 at 5855.868 kb on - strand at 5855.899 kb on + strand at 5855.900 kb on - strand at 5855.900 kb on - strand at 5855.900 kb on - strand at 5855.951 kb on + strand at 5856.142 kb on + strand at 5856.142 kb on + strand at 5856.142 kb on + strand at 5856.142 kb on + strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.149 kb on - strand at 5856.177 kb on - strand at 5856.220 kb on + strand at 5856.321 kb on + strand at 5856.321 kb on + strand at 5856.321 kb on + strand at 5856.321 kb on + strand at 5856.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 5,853,069 + Psyr_4937 0.51 +0.3 5,853,070 - Psyr_4937 0.51 -1.2 5,853,676 + Psyr_4937 0.84 -0.5 5,853,677 - Psyr_4937 0.84 -0.7 5,853,712 - Psyr_4937 0.86 +0.2 5,853,712 - Psyr_4937 0.86 +2.0 5,853,819 - +0.8 5,854,068 + +0.6 5,854,068 + -1.3 5,854,068 + +0.2 5,854,068 + +0.2 5,854,069 - -0.8 5,854,236 + Psyr_4938 0.20 +1.2 5,854,236 + Psyr_4938 0.20 -1.3 5,854,236 + Psyr_4938 0.20 -0.2 5,854,236 + Psyr_4938 0.20 -0.5 5,854,236 + Psyr_4938 0.20 -1.0 5,854,237 - Psyr_4938 0.20 -0.1 5,854,237 - Psyr_4938 0.20 -0.9 5,854,237 - Psyr_4938 0.20 -0.7 5,854,237 - Psyr_4938 0.20 +0.2 5,854,237 - Psyr_4938 0.20 -0.3 5,854,694 - Psyr_4938 0.53 +1.3 5,854,883 + Psyr_4938 0.67 -0.2 5,854,883 + Psyr_4938 0.67 +0.6 5,854,883 + Psyr_4938 0.67 +1.0 5,854,883 + Psyr_4938 0.67 -1.0 5,854,883 + Psyr_4938 0.67 +1.5 5,854,883 + Psyr_4938 0.67 -1.2 5,854,883 + Psyr_4938 0.67 -0.4 5,854,883 + Psyr_4938 0.67 -0.5 5,854,883 + Psyr_4938 0.67 -0.5 5,854,884 - Psyr_4938 0.67 -1.3 5,854,884 - Psyr_4938 0.67 -0.1 5,854,884 - Psyr_4938 0.67 +0.0 5,854,884 - Psyr_4938 0.67 -0.3 5,854,884 - Psyr_4938 0.67 +0.0 5,854,884 - Psyr_4938 0.67 -0.5 5,854,884 - Psyr_4938 0.67 -0.5 5,854,964 + Psyr_4938 0.72 -0.2 5,854,965 - Psyr_4938 0.72 -0.2 5,854,965 - Psyr_4938 0.72 +0.2 5,855,044 + Psyr_4938 0.78 -0.0 5,855,044 + Psyr_4938 0.78 -0.3 5,855,044 + Psyr_4938 0.78 -0.2 5,855,045 - Psyr_4938 0.78 -1.3 5,855,045 - Psyr_4938 0.78 +0.0 5,855,045 - Psyr_4938 0.78 -0.1 5,855,045 - Psyr_4938 0.78 -0.2 5,855,517 + Psyr_4939 0.39 -0.5 5,855,517 + Psyr_4939 0.39 +1.4 5,855,518 - Psyr_4939 0.39 -1.0 5,855,591 + Psyr_4939 0.54 +0.5 5,855,592 - Psyr_4939 0.54 +1.8 5,855,592 - Psyr_4939 0.54 +0.4 5,855,700 + Psyr_4939 0.77 -0.1 5,855,701 - Psyr_4939 0.77 -1.0 5,855,868 - +0.0 5,855,899 + +0.1 5,855,900 - +0.2 5,855,900 - +0.5 5,855,900 - -1.0 5,855,951 + +0.5 5,856,142 + -0.0 5,856,142 + +1.5 5,856,142 + +0.7 5,856,142 + +1.1 5,856,143 - -1.0 5,856,143 - +0.0 5,856,143 - -1.2 5,856,143 - +1.6 5,856,143 - -1.2 5,856,143 - +0.3 5,856,143 - -0.9 5,856,149 - -0.5 5,856,177 - +0.4 5,856,220 + +0.2 5,856,321 + +0.6 5,856,321 + +0.4 5,856,321 + +1.3 5,856,321 + +0.5 5,856,322 - -0.2
Or see this region's nucleotide sequence