Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4766 and Psyr_4767 are separated by 123 nucleotides Psyr_4767 and Psyr_4768 overlap by 1 nucleotides
Psyr_4766: Psyr_4766 - L-threonine aldolase, at 5,641,228 to 5,642,268
_4766
Psyr_4767: Psyr_4767 - Peptidase U62, modulator of DNA gyrase, at 5,642,392 to 5,643,834
_4767
Psyr_4768: Psyr_4768 - conserved hypothetical protein, at 5,643,834 to 5,645,159
_4768
Position (kb) 5642
5643
5644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5641.462 kb on + strand, within Psyr_4766 at 5641.462 kb on + strand, within Psyr_4766 at 5641.463 kb on - strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.682 kb on - strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.162 kb on - strand, within Psyr_4766 at 5642.276 kb on + strand at 5642.314 kb on + strand at 5642.462 kb on + strand at 5642.463 kb on - strand at 5642.467 kb on + strand at 5642.467 kb on + strand at 5642.467 kb on + strand at 5642.468 kb on - strand at 5642.581 kb on + strand, within Psyr_4767 at 5642.581 kb on + strand, within Psyr_4767 at 5642.716 kb on + strand, within Psyr_4767 at 5642.832 kb on - strand, within Psyr_4767 at 5642.860 kb on + strand, within Psyr_4767 at 5642.861 kb on - strand, within Psyr_4767 at 5642.933 kb on - strand, within Psyr_4767 at 5642.973 kb on + strand, within Psyr_4767 at 5642.974 kb on - strand, within Psyr_4767 at 5643.193 kb on + strand, within Psyr_4767 at 5643.193 kb on + strand, within Psyr_4767 at 5643.194 kb on - strand, within Psyr_4767 at 5643.241 kb on + strand, within Psyr_4767 at 5643.242 kb on - strand, within Psyr_4767 at 5643.263 kb on + strand, within Psyr_4767 at 5643.263 kb on + strand, within Psyr_4767 at 5643.302 kb on - strand, within Psyr_4767 at 5643.302 kb on - strand, within Psyr_4767 at 5643.651 kb on + strand, within Psyr_4767 at 5643.651 kb on + strand, within Psyr_4767 at 5643.652 kb on - strand, within Psyr_4767 at 5643.652 kb on - strand, within Psyr_4767 at 5643.652 kb on - strand, within Psyr_4767 at 5643.655 kb on + strand, within Psyr_4767 at 5643.656 kb on - strand, within Psyr_4767 at 5643.656 kb on - strand, within Psyr_4767 at 5643.656 kb on - strand, within Psyr_4767 at 5643.773 kb on + strand at 5643.773 kb on + strand at 5643.773 kb on + strand at 5643.774 kb on - strand at 5643.916 kb on - strand at 5644.257 kb on + strand, within Psyr_4768 at 5644.383 kb on + strand, within Psyr_4768 at 5644.383 kb on + strand, within Psyr_4768 at 5644.383 kb on + strand, within Psyr_4768 at 5644.492 kb on - strand, within Psyr_4768 at 5644.500 kb on + strand, within Psyr_4768 at 5644.501 kb on - strand, within Psyr_4768 at 5644.602 kb on + strand, within Psyr_4768 at 5644.603 kb on - strand, within Psyr_4768 at 5644.603 kb on - strand, within Psyr_4768 at 5644.767 kb on + strand, within Psyr_4768 at 5644.820 kb on + strand, within Psyr_4768 at 5644.821 kb on - strand, within Psyr_4768 at 5644.821 kb on - strand, within Psyr_4768
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 5,641,462 + Psyr_4766 0.22 -1.0 5,641,462 + Psyr_4766 0.22 -0.8 5,641,463 - Psyr_4766 0.23 +0.2 5,641,681 + Psyr_4766 0.44 +0.4 5,641,681 + Psyr_4766 0.44 +0.2 5,641,681 + Psyr_4766 0.44 -2.2 5,641,681 + Psyr_4766 0.44 -0.6 5,641,682 - Psyr_4766 0.44 -0.3 5,642,161 + Psyr_4766 0.90 +0.0 5,642,161 + Psyr_4766 0.90 -1.2 5,642,161 + Psyr_4766 0.90 +0.3 5,642,162 - Psyr_4766 0.90 +0.3 5,642,276 + -0.4 5,642,314 + -2.0 5,642,462 + +1.1 5,642,463 - +0.0 5,642,467 + +0.5 5,642,467 + +0.7 5,642,467 + +0.4 5,642,468 - +0.0 5,642,581 + Psyr_4767 0.13 -2.8 5,642,581 + Psyr_4767 0.13 +1.0 5,642,716 + Psyr_4767 0.22 -1.8 5,642,832 - Psyr_4767 0.30 -1.0 5,642,860 + Psyr_4767 0.32 -1.0 5,642,861 - Psyr_4767 0.33 -0.4 5,642,933 - Psyr_4767 0.37 -1.8 5,642,973 + Psyr_4767 0.40 +0.0 5,642,974 - Psyr_4767 0.40 -0.3 5,643,193 + Psyr_4767 0.56 -0.2 5,643,193 + Psyr_4767 0.56 -1.0 5,643,194 - Psyr_4767 0.56 +1.3 5,643,241 + Psyr_4767 0.59 +0.4 5,643,242 - Psyr_4767 0.59 +1.2 5,643,263 + Psyr_4767 0.60 -0.6 5,643,263 + Psyr_4767 0.60 -1.7 5,643,302 - Psyr_4767 0.63 +0.0 5,643,302 - Psyr_4767 0.63 -0.2 5,643,651 + Psyr_4767 0.87 -0.2 5,643,651 + Psyr_4767 0.87 -0.6 5,643,652 - Psyr_4767 0.87 -0.7 5,643,652 - Psyr_4767 0.87 -0.5 5,643,652 - Psyr_4767 0.87 -2.2 5,643,655 + Psyr_4767 0.88 -0.2 5,643,656 - Psyr_4767 0.88 +0.0 5,643,656 - Psyr_4767 0.88 -0.3 5,643,656 - Psyr_4767 0.88 +0.6 5,643,773 + +0.6 5,643,773 + +0.2 5,643,773 + -0.1 5,643,774 - +1.0 5,643,916 - -0.5 5,644,257 + Psyr_4768 0.32 -0.6 5,644,383 + Psyr_4768 0.41 -0.1 5,644,383 + Psyr_4768 0.41 +0.7 5,644,383 + Psyr_4768 0.41 -0.9 5,644,492 - Psyr_4768 0.50 -0.7 5,644,500 + Psyr_4768 0.50 -0.0 5,644,501 - Psyr_4768 0.50 -1.7 5,644,602 + Psyr_4768 0.58 -0.2 5,644,603 - Psyr_4768 0.58 -1.1 5,644,603 - Psyr_4768 0.58 -0.1 5,644,767 + Psyr_4768 0.70 +1.0 5,644,820 + Psyr_4768 0.74 +0.3 5,644,821 - Psyr_4768 0.74 -0.2 5,644,821 - Psyr_4768 0.74 +3.2
Or see this region's nucleotide sequence