Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4765 and Psyr_4766 are separated by 99 nucleotides Psyr_4766 and Psyr_4767 are separated by 123 nucleotides
Psyr_4765: Psyr_4765 - TraX, at 5,640,382 to 5,641,128
_4765
Psyr_4766: Psyr_4766 - L-threonine aldolase, at 5,641,228 to 5,642,268
_4766
Psyr_4767: Psyr_4767 - Peptidase U62, modulator of DNA gyrase, at 5,642,392 to 5,643,834
_4767
Position (kb) 5641
5642
5643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.276 kb on + strand at 5640.276 kb on + strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.281 kb on - strand at 5640.281 kb on - strand at 5640.705 kb on - strand, within Psyr_4765 at 5640.899 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.002 kb on - strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.029 kb on - strand, within Psyr_4765 at 5641.029 kb on - strand, within Psyr_4765 at 5641.050 kb on + strand, within Psyr_4765 at 5641.051 kb on - strand, within Psyr_4765 at 5641.051 kb on - strand, within Psyr_4765 at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.129 kb on - strand at 5641.129 kb on - strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.192 kb on - strand at 5641.206 kb on - strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.265 kb on - strand at 5641.265 kb on - strand at 5641.265 kb on - strand at 5641.330 kb on + strand at 5641.330 kb on + strand at 5641.331 kb on - strand at 5641.331 kb on - strand at 5641.331 kb on - strand at 5641.462 kb on + strand, within Psyr_4766 at 5641.462 kb on + strand, within Psyr_4766 at 5641.463 kb on - strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.682 kb on - strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.162 kb on - strand, within Psyr_4766 at 5642.276 kb on + strand at 5642.314 kb on + strand at 5642.462 kb on + strand at 5642.463 kb on - strand at 5642.467 kb on + strand at 5642.467 kb on + strand at 5642.467 kb on + strand at 5642.468 kb on - strand at 5642.581 kb on + strand, within Psyr_4767 at 5642.581 kb on + strand, within Psyr_4767 at 5642.716 kb on + strand, within Psyr_4767 at 5642.832 kb on - strand, within Psyr_4767 at 5642.860 kb on + strand, within Psyr_4767 at 5642.861 kb on - strand, within Psyr_4767 at 5642.933 kb on - strand, within Psyr_4767 at 5642.973 kb on + strand, within Psyr_4767 at 5642.974 kb on - strand, within Psyr_4767 at 5643.193 kb on + strand, within Psyr_4767 at 5643.193 kb on + strand, within Psyr_4767 at 5643.194 kb on - strand, within Psyr_4767 at 5643.241 kb on + strand, within Psyr_4767 at 5643.242 kb on - strand, within Psyr_4767 at 5643.263 kb on + strand, within Psyr_4767 at 5643.263 kb on + strand, within Psyr_4767
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 5,640,231 + +0.4 5,640,231 + +0.6 5,640,231 + -1.1 5,640,276 + -0.3 5,640,276 + -2.2 5,640,277 - +0.1 5,640,277 - -0.7 5,640,277 - +0.4 5,640,277 - -1.2 5,640,280 + -0.5 5,640,280 + -0.6 5,640,280 + -0.3 5,640,281 - -0.1 5,640,281 - -1.0 5,640,705 - Psyr_4765 0.43 +1.0 5,640,899 + Psyr_4765 0.69 -0.2 5,641,001 + Psyr_4765 0.83 +0.8 5,641,001 + Psyr_4765 0.83 -0.2 5,641,001 + Psyr_4765 0.83 -0.4 5,641,002 - Psyr_4765 0.83 +1.0 5,641,028 + Psyr_4765 0.86 -0.4 5,641,028 + Psyr_4765 0.86 -0.8 5,641,028 + Psyr_4765 0.86 -0.5 5,641,029 - Psyr_4765 0.87 -1.0 5,641,029 - Psyr_4765 0.87 +0.5 5,641,050 + Psyr_4765 0.89 -0.4 5,641,051 - Psyr_4765 0.90 +1.0 5,641,051 - Psyr_4765 0.90 +0.7 5,641,128 + +0.5 5,641,128 + +1.0 5,641,128 + -0.6 5,641,128 + -0.6 5,641,129 - +0.9 5,641,129 - +0.6 5,641,180 + +1.2 5,641,180 + +1.1 5,641,180 + +0.0 5,641,180 + +0.1 5,641,180 + -0.1 5,641,180 + +0.2 5,641,180 + -2.3 5,641,180 + +1.6 5,641,180 + -0.5 5,641,180 + +0.4 5,641,181 - -0.1 5,641,181 - -0.3 5,641,181 - +0.3 5,641,181 - -0.1 5,641,181 - -0.4 5,641,181 - +0.2 5,641,181 - +0.6 5,641,181 - -1.0 5,641,181 - +0.3 5,641,181 - -0.8 5,641,181 - -0.6 5,641,181 - +0.3 5,641,181 - -0.8 5,641,181 - +0.1 5,641,181 - +0.4 5,641,181 - -0.3 5,641,181 - -2.0 5,641,181 - -1.1 5,641,181 - +0.5 5,641,181 - -0.2 5,641,181 - -0.9 5,641,182 + +0.8 5,641,182 + +0.0 5,641,182 + +0.0 5,641,182 + +0.8 5,641,182 + -0.5 5,641,182 + +3.6 5,641,182 + +0.0 5,641,182 + +0.7 5,641,182 + +0.4 5,641,182 + +0.8 5,641,183 - +1.0 5,641,183 - -0.3 5,641,183 - -0.4 5,641,183 - +0.1 5,641,183 - +0.4 5,641,183 - +0.1 5,641,183 - -0.8 5,641,183 - +0.1 5,641,183 - +0.0 5,641,183 - +0.3 5,641,192 - -0.1 5,641,206 - -0.8 5,641,264 + +1.0 5,641,264 + +0.3 5,641,264 + +0.6 5,641,264 + +0.4 5,641,264 + -2.9 5,641,264 + +1.0 5,641,265 - -0.5 5,641,265 - +0.2 5,641,265 - +3.0 5,641,330 + +1.8 5,641,330 + -0.6 5,641,331 - -0.0 5,641,331 - -0.6 5,641,331 - +0.8 5,641,462 + Psyr_4766 0.22 -1.0 5,641,462 + Psyr_4766 0.22 -0.8 5,641,463 - Psyr_4766 0.23 +0.2 5,641,681 + Psyr_4766 0.44 +0.4 5,641,681 + Psyr_4766 0.44 +0.2 5,641,681 + Psyr_4766 0.44 -2.2 5,641,681 + Psyr_4766 0.44 -0.6 5,641,682 - Psyr_4766 0.44 -0.3 5,642,161 + Psyr_4766 0.90 +0.0 5,642,161 + Psyr_4766 0.90 -1.2 5,642,161 + Psyr_4766 0.90 +0.3 5,642,162 - Psyr_4766 0.90 +0.3 5,642,276 + -0.4 5,642,314 + -2.0 5,642,462 + +1.1 5,642,463 - +0.0 5,642,467 + +0.5 5,642,467 + +0.7 5,642,467 + +0.4 5,642,468 - +0.0 5,642,581 + Psyr_4767 0.13 -2.8 5,642,581 + Psyr_4767 0.13 +1.0 5,642,716 + Psyr_4767 0.22 -1.8 5,642,832 - Psyr_4767 0.30 -1.0 5,642,860 + Psyr_4767 0.32 -1.0 5,642,861 - Psyr_4767 0.33 -0.4 5,642,933 - Psyr_4767 0.37 -1.8 5,642,973 + Psyr_4767 0.40 +0.0 5,642,974 - Psyr_4767 0.40 -0.3 5,643,193 + Psyr_4767 0.56 -0.2 5,643,193 + Psyr_4767 0.56 -1.0 5,643,194 - Psyr_4767 0.56 +1.3 5,643,241 + Psyr_4767 0.59 +0.4 5,643,242 - Psyr_4767 0.59 +1.2 5,643,263 + Psyr_4767 0.60 -0.6 5,643,263 + Psyr_4767 0.60 -1.7
Or see this region's nucleotide sequence