Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4702 and Psyr_4703 overlap by 4 nucleotides Psyr_4703 and Psyr_4704 are separated by 25 nucleotides Psyr_4704 and Psyr_4705 overlap by 4 nucleotides Psyr_4705 and Psyr_4706 are separated by 411 nucleotides
Psyr_4702: Psyr_4702 - Cyclic nucleotide-binding:CBS:Putative nucleotidyltransferase DUF294, at 5,572,016 to 5,573,950
_4702
Psyr_4703: Psyr_4703 - Exonuclease, at 5,573,947 to 5,574,660
_4703
Psyr_4704: Psyr_4704 - conserved hypothetical protein, at 5,574,686 to 5,574,988
_4704
Psyr_4705: Psyr_4705 - conserved hypothetical protein, at 5,574,985 to 5,575,218
_4705
Psyr_4706: Psyr_4706 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,575,630 to 5,577,255
_4706
Position (kb) 5573
5574
5575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5573.038 kb on - strand, within Psyr_4702 at 5573.073 kb on + strand, within Psyr_4702 at 5573.177 kb on - strand, within Psyr_4702 at 5573.266 kb on + strand, within Psyr_4702 at 5573.267 kb on - strand, within Psyr_4702 at 5573.267 kb on - strand, within Psyr_4702 at 5573.380 kb on + strand, within Psyr_4702 at 5573.419 kb on + strand, within Psyr_4702 at 5573.420 kb on - strand, within Psyr_4702 at 5573.420 kb on - strand, within Psyr_4702 at 5573.420 kb on - strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.771 kb on + strand at 5573.771 kb on + strand at 5573.835 kb on - strand at 5573.835 kb on - strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.947 kb on - strand at 5573.947 kb on - strand at 5573.947 kb on - strand at 5574.019 kb on - strand, within Psyr_4703 at 5574.846 kb on + strand, within Psyr_4704 at 5575.277 kb on - strand at 5575.321 kb on + strand at 5575.321 kb on + strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.349 kb on - strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.518 kb on + strand at 5575.519 kb on - strand at 5575.542 kb on + strand at 5575.542 kb on + strand at 5575.543 kb on - strand at 5575.579 kb on - strand at 5575.579 kb on - strand at 5575.590 kb on + strand at 5575.590 kb on + strand at 5575.591 kb on - strand at 5575.608 kb on + strand at 5575.608 kb on + strand at 5575.608 kb on + strand at 5575.609 kb on - strand at 5575.609 kb on - strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.644 kb on + strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 5,573,038 - Psyr_4702 0.53 +1.0 5,573,073 + Psyr_4702 0.55 -2.1 5,573,177 - Psyr_4702 0.60 -0.3 5,573,266 + Psyr_4702 0.65 -0.3 5,573,267 - Psyr_4702 0.65 +1.3 5,573,267 - Psyr_4702 0.65 -0.2 5,573,380 + Psyr_4702 0.70 -0.1 5,573,419 + Psyr_4702 0.73 +0.7 5,573,420 - Psyr_4702 0.73 +0.4 5,573,420 - Psyr_4702 0.73 +0.7 5,573,420 - Psyr_4702 0.73 -0.2 5,573,423 + Psyr_4702 0.73 -1.5 5,573,423 + Psyr_4702 0.73 +1.0 5,573,423 + Psyr_4702 0.73 +0.3 5,573,424 - Psyr_4702 0.73 +0.5 5,573,424 - Psyr_4702 0.73 +0.7 5,573,424 - Psyr_4702 0.73 -2.0 5,573,424 - Psyr_4702 0.73 -0.0 5,573,424 - Psyr_4702 0.73 -0.4 5,573,424 - Psyr_4702 0.73 -0.0 5,573,424 - Psyr_4702 0.73 -0.2 5,573,424 - Psyr_4702 0.73 -0.0 5,573,771 + +0.6 5,573,771 + +2.3 5,573,835 - -1.1 5,573,835 - -0.6 5,573,946 + -0.1 5,573,946 + +1.0 5,573,946 + -0.8 5,573,946 + +1.0 5,573,947 - +0.3 5,573,947 - +0.3 5,573,947 - -0.4 5,574,019 - Psyr_4703 0.10 +0.8 5,574,846 + Psyr_4704 0.53 -0.2 5,575,277 - -0.4 5,575,321 + -2.6 5,575,321 + +0.7 5,575,322 - -1.1 5,575,322 - +0.8 5,575,322 - +0.4 5,575,322 - -1.4 5,575,322 - +1.1 5,575,349 - -0.0 5,575,504 + -0.2 5,575,504 + -2.2 5,575,504 + +0.1 5,575,504 + +0.0 5,575,504 + +0.0 5,575,518 + +2.6 5,575,519 - -0.3 5,575,542 + -0.0 5,575,542 + -0.2 5,575,543 - +0.3 5,575,579 - +2.0 5,575,579 - -0.0 5,575,590 + +0.1 5,575,590 + -0.8 5,575,591 - -0.6 5,575,608 + -0.7 5,575,608 + +0.8 5,575,608 + +0.8 5,575,609 - +2.0 5,575,609 - +0.5 5,575,629 + +0.8 5,575,629 + -0.0 5,575,629 + +0.7 5,575,629 + -0.3 5,575,629 + +0.2 5,575,629 + +0.4 5,575,629 + -0.2 5,575,630 - -1.3 5,575,630 - +1.0 5,575,630 - +0.5 5,575,630 - +0.7 5,575,630 - -1.2 5,575,630 - +0.4 5,575,644 + -0.4 5,575,645 - +0.2 5,575,645 - +1.6 5,575,645 - +0.6 5,575,645 - +1.1
Or see this region's nucleotide sequence