Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4699 and Psyr_4700 are separated by 322 nucleotides Psyr_4700 and Psyr_4701 are separated by 66 nucleotides Psyr_4701 and Psyr_4702 are separated by 231 nucleotides
Psyr_4699: Psyr_4699 - Amino acid-binding ACT, at 5,568,229 to 5,568,771
_4699
Psyr_4700: Psyr_4700 - malate synthase, at 5,569,094 to 5,571,271
_4700
Psyr_4701: Psyr_4701 - Response regulator receiver, at 5,571,338 to 5,571,784
_4701
Psyr_4702: Psyr_4702 - Cyclic nucleotide-binding:CBS:Putative nucleotidyltransferase DUF294, at 5,572,016 to 5,573,950
_4702
Position (kb) 5569
5570
5571
5572 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5568.117 kb on + strand at 5568.117 kb on + strand at 5568.118 kb on - strand at 5568.195 kb on + strand at 5568.196 kb on - strand at 5568.196 kb on - strand at 5568.196 kb on - strand at 5568.196 kb on - strand at 5568.231 kb on - strand at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.376 kb on + strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.377 kb on - strand, within Psyr_4699 at 5568.755 kb on - strand at 5568.801 kb on - strand at 5568.801 kb on - strand at 5568.819 kb on + strand at 5568.819 kb on + strand at 5568.820 kb on - strand at 5568.825 kb on + strand at 5568.826 kb on - strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.827 kb on + strand at 5568.828 kb on - strand at 5568.828 kb on - strand at 5568.828 kb on - strand at 5568.828 kb on - strand at 5568.828 kb on - strand at 5568.867 kb on + strand at 5568.884 kb on + strand at 5568.922 kb on + strand at 5568.964 kb on + strand at 5568.964 kb on + strand at 5568.964 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5568.999 kb on + strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.000 kb on - strand at 5569.019 kb on + strand at 5569.019 kb on + strand at 5569.019 kb on + strand at 5569.019 kb on + strand at 5569.019 kb on + strand at 5569.020 kb on - strand at 5569.020 kb on - strand at 5569.038 kb on + strand at 5569.038 kb on + strand at 5569.039 kb on - strand at 5569.103 kb on + strand at 5569.103 kb on + strand at 5569.103 kb on + strand at 5569.103 kb on + strand at 5569.104 kb on - strand at 5569.272 kb on + strand at 5569.272 kb on + strand at 5569.272 kb on + strand at 5569.272 kb on + strand at 5569.273 kb on - strand at 5569.334 kb on + strand, within Psyr_4700 at 5569.335 kb on - strand, within Psyr_4700 at 5569.508 kb on + strand, within Psyr_4700 at 5569.508 kb on + strand, within Psyr_4700 at 5569.509 kb on - strand, within Psyr_4700 at 5569.509 kb on - strand, within Psyr_4700 at 5569.509 kb on - strand, within Psyr_4700 at 5569.571 kb on + strand, within Psyr_4700 at 5569.571 kb on + strand, within Psyr_4700 at 5569.572 kb on - strand, within Psyr_4700 at 5569.572 kb on - strand, within Psyr_4700 at 5569.573 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.670 kb on + strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.671 kb on - strand, within Psyr_4700 at 5569.672 kb on + strand, within Psyr_4700 at 5569.672 kb on + strand, within Psyr_4700 at 5569.672 kb on + strand, within Psyr_4700 at 5569.672 kb on + strand, within Psyr_4700 at 5569.672 kb on + strand, within Psyr_4700 at 5569.672 kb on + strand, within Psyr_4700 at 5569.672 kb on + strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.673 kb on - strand, within Psyr_4700 at 5569.721 kb on - strand, within Psyr_4700 at 5570.054 kb on + strand, within Psyr_4700 at 5570.054 kb on + strand, within Psyr_4700 at 5570.054 kb on + strand, within Psyr_4700 at 5570.054 kb on + strand, within Psyr_4700 at 5570.055 kb on - strand, within Psyr_4700 at 5570.267 kb on + strand, within Psyr_4700 at 5570.267 kb on + strand, within Psyr_4700 at 5570.267 kb on + strand, within Psyr_4700 at 5570.267 kb on + strand, within Psyr_4700 at 5570.267 kb on + strand, within Psyr_4700 at 5570.267 kb on + strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.268 kb on - strand, within Psyr_4700 at 5570.343 kb on + strand, within Psyr_4700 at 5570.344 kb on - strand, within Psyr_4700 at 5570.359 kb on + strand, within Psyr_4700 at 5570.751 kb on - strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5571.269 kb on + strand at 5571.386 kb on - strand, within Psyr_4701 at 5571.808 kb on + strand at 5571.808 kb on + strand at 5571.823 kb on + strand at 5571.902 kb on - strand at 5571.902 kb on - strand at 5571.902 kb on - strand at 5571.902 kb on - strand at 5571.940 kb on + strand at 5571.940 kb on + strand at 5571.941 kb on - strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.139 kb on + strand at 5572.140 kb on - strand at 5572.170 kb on - strand at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 5,568,117 + +0.6 5,568,117 + -1.0 5,568,118 - +0.8 5,568,195 + -1.6 5,568,196 - -1.2 5,568,196 - +0.1 5,568,196 - -0.3 5,568,196 - +1.9 5,568,231 - -0.5 5,568,376 + Psyr_4699 0.27 +0.8 5,568,376 + Psyr_4699 0.27 +0.5 5,568,376 + Psyr_4699 0.27 -1.6 5,568,376 + Psyr_4699 0.27 -0.7 5,568,376 + Psyr_4699 0.27 -0.9 5,568,377 - Psyr_4699 0.27 -0.3 5,568,377 - Psyr_4699 0.27 -0.5 5,568,377 - Psyr_4699 0.27 +0.2 5,568,377 - Psyr_4699 0.27 -1.0 5,568,377 - Psyr_4699 0.27 -1.3 5,568,755 - -1.9 5,568,801 - +2.3 5,568,801 - -0.2 5,568,819 + +0.1 5,568,819 + -0.7 5,568,820 - -0.9 5,568,825 + -0.6 5,568,826 - +2.0 5,568,827 + -0.8 5,568,827 + +1.0 5,568,827 + +1.6 5,568,827 + -0.8 5,568,827 + +0.8 5,568,827 + -0.8 5,568,827 + +0.8 5,568,827 + +0.3 5,568,827 + +0.2 5,568,827 + +1.3 5,568,827 + -1.0 5,568,827 + +0.5 5,568,827 + -0.2 5,568,827 + -0.0 5,568,828 - +0.2 5,568,828 - +0.4 5,568,828 - -0.0 5,568,828 - -0.3 5,568,828 - +0.5 5,568,867 + -0.2 5,568,884 + -0.3 5,568,922 + -0.6 5,568,964 + -0.3 5,568,964 + +1.3 5,568,964 + -0.3 5,568,999 + +1.3 5,568,999 + +2.0 5,568,999 + -1.6 5,568,999 + -1.3 5,568,999 + +0.4 5,568,999 + +1.1 5,568,999 + +0.6 5,568,999 + -0.9 5,568,999 + -1.1 5,568,999 + +0.8 5,569,000 - +1.0 5,569,000 - -0.9 5,569,000 - -1.3 5,569,000 - -0.3 5,569,000 - -0.0 5,569,000 - -1.3 5,569,000 - +1.0 5,569,000 - +1.4 5,569,000 - +0.4 5,569,000 - +1.0 5,569,000 - -2.3 5,569,000 - +0.2 5,569,019 + -0.2 5,569,019 + -1.3 5,569,019 + +0.3 5,569,019 + -0.0 5,569,019 + -0.2 5,569,020 - +0.4 5,569,020 - -0.5 5,569,038 + +0.2 5,569,038 + +0.1 5,569,039 - -0.7 5,569,103 + -0.8 5,569,103 + +1.0 5,569,103 + -0.8 5,569,103 + -0.3 5,569,104 - -0.5 5,569,272 + -0.5 5,569,272 + -0.2 5,569,272 + +0.1 5,569,272 + +3.3 5,569,273 - -0.9 5,569,334 + Psyr_4700 0.11 -0.7 5,569,335 - Psyr_4700 0.11 +1.6 5,569,508 + Psyr_4700 0.19 -1.7 5,569,508 + Psyr_4700 0.19 +0.1 5,569,509 - Psyr_4700 0.19 -0.4 5,569,509 - Psyr_4700 0.19 +1.1 5,569,509 - Psyr_4700 0.19 +0.6 5,569,571 + Psyr_4700 0.22 +0.8 5,569,571 + Psyr_4700 0.22 -0.2 5,569,572 - Psyr_4700 0.22 -0.2 5,569,572 - Psyr_4700 0.22 +0.7 5,569,573 + Psyr_4700 0.22 -0.2 5,569,670 + Psyr_4700 0.26 -2.5 5,569,670 + Psyr_4700 0.26 +0.3 5,569,670 + Psyr_4700 0.26 -0.0 5,569,670 + Psyr_4700 0.26 -0.1 5,569,670 + Psyr_4700 0.26 -0.2 5,569,670 + Psyr_4700 0.26 -1.8 5,569,670 + Psyr_4700 0.26 -1.1 5,569,670 + Psyr_4700 0.26 +0.7 5,569,670 + Psyr_4700 0.26 +0.3 5,569,670 + Psyr_4700 0.26 -0.8 5,569,670 + Psyr_4700 0.26 +0.3 5,569,670 + Psyr_4700 0.26 -0.4 5,569,670 + Psyr_4700 0.26 -1.5 5,569,671 - Psyr_4700 0.26 -0.0 5,569,671 - Psyr_4700 0.26 -0.1 5,569,671 - Psyr_4700 0.26 +1.0 5,569,671 - Psyr_4700 0.26 +0.3 5,569,671 - Psyr_4700 0.26 -0.2 5,569,671 - Psyr_4700 0.26 +0.2 5,569,671 - Psyr_4700 0.26 -1.6 5,569,671 - Psyr_4700 0.26 -0.2 5,569,671 - Psyr_4700 0.26 -0.1 5,569,671 - Psyr_4700 0.26 +2.0 5,569,671 - Psyr_4700 0.26 -0.5 5,569,671 - Psyr_4700 0.26 -1.1 5,569,671 - Psyr_4700 0.26 -0.9 5,569,671 - Psyr_4700 0.26 -0.4 5,569,672 + Psyr_4700 0.27 -2.2 5,569,672 + Psyr_4700 0.27 +0.7 5,569,672 + Psyr_4700 0.27 -0.1 5,569,672 + Psyr_4700 0.27 -0.6 5,569,672 + Psyr_4700 0.27 -0.4 5,569,672 + Psyr_4700 0.27 -0.0 5,569,672 + Psyr_4700 0.27 +0.6 5,569,673 - Psyr_4700 0.27 +0.3 5,569,673 - Psyr_4700 0.27 -0.0 5,569,673 - Psyr_4700 0.27 -0.4 5,569,673 - Psyr_4700 0.27 +0.1 5,569,673 - Psyr_4700 0.27 -1.4 5,569,673 - Psyr_4700 0.27 -0.6 5,569,673 - Psyr_4700 0.27 -0.5 5,569,673 - Psyr_4700 0.27 +0.2 5,569,673 - Psyr_4700 0.27 -2.7 5,569,721 - Psyr_4700 0.29 -0.8 5,570,054 + Psyr_4700 0.44 -0.0 5,570,054 + Psyr_4700 0.44 -0.6 5,570,054 + Psyr_4700 0.44 -0.0 5,570,054 + Psyr_4700 0.44 -0.2 5,570,055 - Psyr_4700 0.44 +1.5 5,570,267 + Psyr_4700 0.54 +0.6 5,570,267 + Psyr_4700 0.54 +2.0 5,570,267 + Psyr_4700 0.54 +0.2 5,570,267 + Psyr_4700 0.54 +1.0 5,570,267 + Psyr_4700 0.54 -0.6 5,570,267 + Psyr_4700 0.54 +0.3 5,570,268 - Psyr_4700 0.54 -0.8 5,570,268 - Psyr_4700 0.54 +0.1 5,570,268 - Psyr_4700 0.54 -1.9 5,570,268 - Psyr_4700 0.54 +1.2 5,570,268 - Psyr_4700 0.54 +0.4 5,570,268 - Psyr_4700 0.54 -0.3 5,570,268 - Psyr_4700 0.54 -1.5 5,570,268 - Psyr_4700 0.54 +0.4 5,570,343 + Psyr_4700 0.57 -0.5 5,570,344 - Psyr_4700 0.57 -0.7 5,570,359 + Psyr_4700 0.58 +2.6 5,570,751 - Psyr_4700 0.76 +2.2 5,570,913 + Psyr_4700 0.84 +0.6 5,570,913 + Psyr_4700 0.84 +0.3 5,570,913 + Psyr_4700 0.84 +0.2 5,570,913 + Psyr_4700 0.84 +1.0 5,570,914 - Psyr_4700 0.84 +1.0 5,570,914 - Psyr_4700 0.84 +0.5 5,570,914 - Psyr_4700 0.84 -0.7 5,570,914 - Psyr_4700 0.84 -0.8 5,571,269 + -0.2 5,571,386 - Psyr_4701 0.11 -2.2 5,571,808 + -0.0 5,571,808 + -0.0 5,571,823 + +1.7 5,571,902 - +0.5 5,571,902 - -0.0 5,571,902 - -0.8 5,571,902 - +0.8 5,571,940 + +0.3 5,571,940 + -0.8 5,571,941 - +0.4 5,571,947 + +0.6 5,571,947 + +0.4 5,571,947 + +0.3 5,571,947 + -0.1 5,571,947 + -0.6 5,571,947 + +1.0 5,571,947 + +1.1 5,571,948 - -0.4 5,571,948 - +0.1 5,571,948 - -2.0 5,571,948 - +0.6 5,571,948 - -1.0 5,571,948 - +0.7 5,572,071 + +0.4 5,572,071 + +0.2 5,572,071 + -0.5 5,572,071 + -0.6 5,572,071 + +0.5 5,572,072 - -0.1 5,572,072 - +0.3 5,572,072 - +0.4 5,572,072 - -0.1 5,572,072 - +0.7 5,572,072 - +0.6 5,572,072 - -0.4 5,572,072 - +0.6 5,572,072 - +0.3 5,572,072 - -0.5 5,572,072 - +0.6 5,572,072 - -0.5 5,572,139 + +1.1 5,572,140 - -0.2 5,572,170 - +0.5 5,572,223 + Psyr_4702 0.11 +0.4 5,572,223 + Psyr_4702 0.11 -1.7 5,572,223 + Psyr_4702 0.11 -0.2 5,572,223 + Psyr_4702 0.11 +0.1 5,572,224 - Psyr_4702 0.11 -0.6 5,572,224 - Psyr_4702 0.11 +0.9 5,572,224 - Psyr_4702 0.11 -1.2 5,572,224 - Psyr_4702 0.11 +1.1 5,572,224 - Psyr_4702 0.11 -0.0 5,572,224 - Psyr_4702 0.11 +0.6 5,572,224 - Psyr_4702 0.11 +1.0
Or see this region's nucleotide sequence