Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4591 and Psyr_4592 overlap by 4 nucleotides Psyr_4592 and Psyr_4593 are separated by 130 nucleotides Psyr_4593 and Psyr_4594 overlap by 4 nucleotides Psyr_4594 and Psyr_4595 are separated by 60 nucleotides
Psyr_4591: Psyr_4591 - DNA circulation, N-terminal, at 5,450,927 to 5,452,339
_4591
Psyr_4592: Psyr_4592 - Phage tail tape measure protein TP901, core region, at 5,452,336 to 5,454,495
_4592
Psyr_4593: Psyr_4593 - sigma factor domain protein, at 5,454,626 to 5,454,922
_4593
Psyr_4594: Psyr_4594 - conserved hypothetical protein, at 5,454,919 to 5,455,266
_4594
Psyr_4595: Psyr_4595 - Bacteriophage Mu tail sheath, at 5,455,327 to 5,456,823
_4595
Position (kb) 5452
5453
5454
5455 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5451.532 kb on + strand, within Psyr_4591 at 5451.533 kb on - strand, within Psyr_4591 at 5451.533 kb on - strand, within Psyr_4591 at 5451.533 kb on - strand, within Psyr_4591 at 5451.640 kb on + strand, within Psyr_4591 at 5451.640 kb on + strand, within Psyr_4591 at 5451.707 kb on - strand, within Psyr_4591 at 5451.771 kb on + strand, within Psyr_4591 at 5451.771 kb on + strand, within Psyr_4591 at 5451.815 kb on + strand, within Psyr_4591 at 5451.815 kb on + strand, within Psyr_4591 at 5451.815 kb on + strand, within Psyr_4591 at 5451.815 kb on + strand, within Psyr_4591 at 5451.815 kb on + strand, within Psyr_4591 at 5451.847 kb on + strand, within Psyr_4591 at 5452.177 kb on + strand, within Psyr_4591 at 5452.212 kb on + strand at 5452.212 kb on + strand at 5452.212 kb on + strand at 5452.212 kb on + strand at 5452.213 kb on - strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.333 kb on + strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.334 kb on - strand at 5452.725 kb on + strand, within Psyr_4592 at 5452.725 kb on + strand, within Psyr_4592 at 5452.726 kb on - strand, within Psyr_4592 at 5452.762 kb on + strand, within Psyr_4592 at 5452.763 kb on - strand, within Psyr_4592 at 5452.763 kb on - strand, within Psyr_4592 at 5452.763 kb on - strand, within Psyr_4592 at 5453.113 kb on + strand, within Psyr_4592 at 5453.113 kb on + strand, within Psyr_4592 at 5453.113 kb on + strand, within Psyr_4592 at 5453.113 kb on + strand, within Psyr_4592 at 5453.114 kb on - strand, within Psyr_4592 at 5453.114 kb on - strand, within Psyr_4592 at 5453.114 kb on - strand, within Psyr_4592 at 5453.114 kb on - strand, within Psyr_4592 at 5453.169 kb on - strand, within Psyr_4592 at 5453.169 kb on - strand, within Psyr_4592 at 5453.312 kb on - strand, within Psyr_4592 at 5453.439 kb on + strand, within Psyr_4592 at 5453.439 kb on + strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5453.440 kb on - strand, within Psyr_4592 at 5454.143 kb on - strand, within Psyr_4592 at 5454.143 kb on - strand, within Psyr_4592 at 5454.143 kb on - strand, within Psyr_4592 at 5454.143 kb on - strand, within Psyr_4592 at 5454.396 kb on + strand at 5454.397 kb on - strand at 5454.397 kb on - strand at 5454.397 kb on - strand at 5454.484 kb on - strand at 5454.601 kb on + strand at 5454.601 kb on + strand at 5454.602 kb on - strand at 5454.754 kb on - strand, within Psyr_4593 at 5454.754 kb on - strand, within Psyr_4593 at 5454.754 kb on - strand, within Psyr_4593 at 5454.754 kb on - strand, within Psyr_4593 at 5454.808 kb on - strand, within Psyr_4593 at 5454.845 kb on - strand, within Psyr_4593 at 5455.002 kb on - strand, within Psyr_4594 at 5455.019 kb on + strand, within Psyr_4594 at 5455.019 kb on + strand, within Psyr_4594 at 5455.019 kb on + strand, within Psyr_4594 at 5455.019 kb on + strand, within Psyr_4594 at 5455.019 kb on + strand, within Psyr_4594 at 5455.019 kb on + strand, within Psyr_4594 at 5455.020 kb on - strand, within Psyr_4594 at 5455.020 kb on - strand, within Psyr_4594 at 5455.020 kb on - strand, within Psyr_4594 at 5455.020 kb on - strand, within Psyr_4594 at 5455.020 kb on - strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.145 kb on + strand, within Psyr_4594 at 5455.146 kb on - strand, within Psyr_4594 at 5455.146 kb on - strand, within Psyr_4594 at 5455.146 kb on - strand, within Psyr_4594 at 5455.146 kb on - strand, within Psyr_4594 at 5455.146 kb on - strand, within Psyr_4594 at 5455.146 kb on - strand, within Psyr_4594 at 5455.149 kb on - strand, within Psyr_4594 at 5455.238 kb on + strand at 5455.238 kb on + strand at 5455.238 kb on + strand at 5455.238 kb on + strand at 5455.238 kb on + strand at 5455.239 kb on - strand at 5455.239 kb on - strand at 5455.239 kb on - strand at 5455.239 kb on - strand at 5455.239 kb on - strand at 5455.273 kb on + strand at 5455.273 kb on + strand at 5455.322 kb on + strand at 5455.328 kb on + strand at 5455.329 kb on - strand at 5455.343 kb on + strand at 5455.344 kb on - strand at 5455.394 kb on + strand at 5455.394 kb on + strand at 5455.394 kb on + strand at 5455.394 kb on + strand at 5455.394 kb on + strand at 5455.394 kb on + strand at 5455.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 5,451,532 + Psyr_4591 0.43 +1.5 5,451,533 - Psyr_4591 0.43 -1.2 5,451,533 - Psyr_4591 0.43 +0.3 5,451,533 - Psyr_4591 0.43 -0.8 5,451,640 + Psyr_4591 0.50 -0.1 5,451,640 + Psyr_4591 0.50 +0.4 5,451,707 - Psyr_4591 0.55 -0.7 5,451,771 + Psyr_4591 0.60 +0.2 5,451,771 + Psyr_4591 0.60 +0.4 5,451,815 + Psyr_4591 0.63 -0.2 5,451,815 + Psyr_4591 0.63 -0.8 5,451,815 + Psyr_4591 0.63 +1.7 5,451,815 + Psyr_4591 0.63 -1.8 5,451,815 + Psyr_4591 0.63 -0.1 5,451,847 + Psyr_4591 0.65 -0.1 5,452,177 + Psyr_4591 0.88 +0.8 5,452,212 + +0.9 5,452,212 + +0.2 5,452,212 + +1.3 5,452,212 + +0.6 5,452,213 - +0.5 5,452,333 + -1.4 5,452,333 + -0.4 5,452,333 + -0.5 5,452,333 + +0.7 5,452,333 + +0.6 5,452,333 + -0.1 5,452,333 + +0.2 5,452,333 + +0.8 5,452,333 + +0.3 5,452,333 + +0.2 5,452,333 + +0.5 5,452,333 + +0.1 5,452,333 + +0.6 5,452,333 + +1.7 5,452,333 + +0.9 5,452,333 + +1.3 5,452,334 - -0.5 5,452,334 - +0.2 5,452,334 - +0.8 5,452,334 - +0.6 5,452,334 - +0.6 5,452,334 - -1.3 5,452,334 - +0.5 5,452,334 - +0.0 5,452,334 - +2.3 5,452,334 - -0.1 5,452,334 - -0.4 5,452,334 - -0.2 5,452,725 + Psyr_4592 0.18 +1.2 5,452,725 + Psyr_4592 0.18 +1.1 5,452,726 - Psyr_4592 0.18 +0.9 5,452,762 + Psyr_4592 0.20 -0.4 5,452,763 - Psyr_4592 0.20 +0.3 5,452,763 - Psyr_4592 0.20 +0.8 5,452,763 - Psyr_4592 0.20 +1.2 5,453,113 + Psyr_4592 0.36 +0.5 5,453,113 + Psyr_4592 0.36 +0.1 5,453,113 + Psyr_4592 0.36 -1.0 5,453,113 + Psyr_4592 0.36 +0.9 5,453,114 - Psyr_4592 0.36 +1.1 5,453,114 - Psyr_4592 0.36 +1.5 5,453,114 - Psyr_4592 0.36 -0.9 5,453,114 - Psyr_4592 0.36 +0.1 5,453,169 - Psyr_4592 0.39 +0.1 5,453,169 - Psyr_4592 0.39 -0.2 5,453,312 - Psyr_4592 0.45 +0.2 5,453,439 + Psyr_4592 0.51 +0.8 5,453,439 + Psyr_4592 0.51 +1.5 5,453,440 - Psyr_4592 0.51 +1.3 5,453,440 - Psyr_4592 0.51 +1.5 5,453,440 - Psyr_4592 0.51 +3.7 5,453,440 - Psyr_4592 0.51 +0.3 5,453,440 - Psyr_4592 0.51 -2.0 5,453,440 - Psyr_4592 0.51 +0.6 5,453,440 - Psyr_4592 0.51 +0.3 5,453,440 - Psyr_4592 0.51 -0.8 5,453,440 - Psyr_4592 0.51 -1.1 5,454,143 - Psyr_4592 0.84 +0.9 5,454,143 - Psyr_4592 0.84 +0.2 5,454,143 - Psyr_4592 0.84 -0.0 5,454,143 - Psyr_4592 0.84 -0.3 5,454,396 + +0.6 5,454,397 - +0.1 5,454,397 - +0.9 5,454,397 - +0.9 5,454,484 - +0.5 5,454,601 + -0.5 5,454,601 + +0.0 5,454,602 - +0.1 5,454,754 - Psyr_4593 0.43 -1.6 5,454,754 - Psyr_4593 0.43 -0.5 5,454,754 - Psyr_4593 0.43 +0.9 5,454,754 - Psyr_4593 0.43 +0.6 5,454,808 - Psyr_4593 0.61 -1.1 5,454,845 - Psyr_4593 0.74 +0.1 5,455,002 - Psyr_4594 0.24 -0.9 5,455,019 + Psyr_4594 0.29 +0.9 5,455,019 + Psyr_4594 0.29 +0.2 5,455,019 + Psyr_4594 0.29 +0.1 5,455,019 + Psyr_4594 0.29 -0.0 5,455,019 + Psyr_4594 0.29 +0.3 5,455,019 + Psyr_4594 0.29 +0.4 5,455,020 - Psyr_4594 0.29 -0.4 5,455,020 - Psyr_4594 0.29 +1.3 5,455,020 - Psyr_4594 0.29 -0.1 5,455,020 - Psyr_4594 0.29 -0.4 5,455,020 - Psyr_4594 0.29 +0.5 5,455,145 + Psyr_4594 0.65 +0.9 5,455,145 + Psyr_4594 0.65 +0.3 5,455,145 + Psyr_4594 0.65 +1.1 5,455,145 + Psyr_4594 0.65 +0.0 5,455,145 + Psyr_4594 0.65 +1.1 5,455,145 + Psyr_4594 0.65 +0.6 5,455,145 + Psyr_4594 0.65 -0.2 5,455,145 + Psyr_4594 0.65 +0.2 5,455,145 + Psyr_4594 0.65 +0.1 5,455,145 + Psyr_4594 0.65 -0.2 5,455,146 - Psyr_4594 0.65 -0.5 5,455,146 - Psyr_4594 0.65 +1.0 5,455,146 - Psyr_4594 0.65 +0.1 5,455,146 - Psyr_4594 0.65 -1.1 5,455,146 - Psyr_4594 0.65 +1.0 5,455,146 - Psyr_4594 0.65 +0.7 5,455,149 - Psyr_4594 0.66 -0.5 5,455,238 + -0.4 5,455,238 + -0.7 5,455,238 + +0.6 5,455,238 + +0.6 5,455,238 + +0.5 5,455,239 - +1.3 5,455,239 - -0.2 5,455,239 - -0.9 5,455,239 - -0.4 5,455,239 - +0.0 5,455,273 + -1.3 5,455,273 + +0.6 5,455,322 + -0.1 5,455,328 + +0.2 5,455,329 - +0.2 5,455,343 + -0.6 5,455,344 - +1.3 5,455,394 + +0.7 5,455,394 + +0.9 5,455,394 + -0.2 5,455,394 + +0.3 5,455,394 + -0.1 5,455,394 + +2.5 5,455,395 - -0.5
Or see this region's nucleotide sequence