Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4277 and Psyr_4278 are separated by 336 nucleotides Psyr_4278 and Psyr_4279 are separated by 129 nucleotides Psyr_4279 and Psyr_4280 are separated by 91 nucleotides Psyr_4280 and Psyr_4281 are separated by 21 nucleotides
Psyr_4277: Psyr_4277 - Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,101,714 to 5,102,490
_4277
Psyr_4278: Psyr_4278 - regulatory protein, LuxR, at 5,102,827 to 5,103,060
_4278
Psyr_4279: Psyr_4279 - 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase, at 5,103,190 to 5,104,314
_4279
Psyr_4280: Psyr_4280 - conserved hypothetical protein, at 5,104,406 to 5,104,573
_4280
Psyr_4281: Psyr_4281 - cytochrome bd quinol oxidase subunit 2 apoprotein, at 5,104,595 to 5,105,602
_4281
Position (kb) 5103
5104
5105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5102.318 kb on + strand, within Psyr_4277 at 5102.319 kb on - strand, within Psyr_4277 at 5102.319 kb on - strand, within Psyr_4277 at 5102.329 kb on + strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.512 kb on + strand at 5102.601 kb on + strand at 5102.601 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.765 kb on + strand at 5102.765 kb on + strand at 5102.766 kb on - strand at 5102.766 kb on - strand at 5102.766 kb on - strand at 5102.775 kb on + strand at 5102.775 kb on + strand at 5102.776 kb on - strand at 5102.776 kb on - strand at 5102.785 kb on - strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.810 kb on + strand at 5102.810 kb on + strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.824 kb on + strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.843 kb on + strand at 5103.032 kb on + strand, within Psyr_4278 at 5103.032 kb on + strand, within Psyr_4278 at 5103.032 kb on + strand, within Psyr_4278 at 5103.033 kb on - strand, within Psyr_4278 at 5103.108 kb on + strand at 5103.113 kb on - strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.286 kb on + strand at 5103.573 kb on - strand, within Psyr_4279 at 5103.573 kb on - strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.920 kb on + strand, within Psyr_4279 at 5103.961 kb on + strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.596 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.820 kb on + strand, within Psyr_4281 at 5104.820 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 5,102,318 + Psyr_4277 0.78 +0.3 5,102,319 - Psyr_4277 0.78 -0.1 5,102,319 - Psyr_4277 0.78 -0.0 5,102,329 + Psyr_4277 0.79 -1.1 5,102,330 - Psyr_4277 0.79 +0.4 5,102,330 - Psyr_4277 0.79 -1.3 5,102,330 - Psyr_4277 0.79 +1.0 5,102,512 + -0.3 5,102,601 + +0.5 5,102,601 + -0.0 5,102,606 + +0.4 5,102,606 + -0.4 5,102,606 + -1.1 5,102,606 + +0.5 5,102,607 - -0.6 5,102,607 - +1.9 5,102,607 - +0.1 5,102,607 - -0.1 5,102,607 - -1.0 5,102,607 - +0.3 5,102,607 - +0.4 5,102,765 + +1.6 5,102,765 + +0.1 5,102,766 - +0.2 5,102,766 - +0.2 5,102,766 - +0.4 5,102,775 + +0.8 5,102,775 + +0.3 5,102,776 - -1.1 5,102,776 - +1.6 5,102,785 - +0.0 5,102,804 + +0.1 5,102,804 + -0.5 5,102,804 + -1.5 5,102,804 + -0.5 5,102,805 - +1.2 5,102,805 - +1.1 5,102,805 - -1.1 5,102,805 - +0.0 5,102,805 - +2.1 5,102,805 - -1.1 5,102,810 + +0.0 5,102,810 + -1.9 5,102,811 - +1.1 5,102,811 - -0.6 5,102,811 - +1.5 5,102,824 + -0.7 5,102,825 - -0.1 5,102,825 - -0.3 5,102,825 - +0.1 5,102,825 - -0.7 5,102,843 + -0.6 5,103,032 + Psyr_4278 0.88 -0.7 5,103,032 + Psyr_4278 0.88 -0.3 5,103,032 + Psyr_4278 0.88 +0.9 5,103,033 - Psyr_4278 0.88 -2.5 5,103,108 + -0.2 5,103,113 - +0.4 5,103,160 + -0.7 5,103,160 + -0.7 5,103,160 + -0.6 5,103,160 + -0.3 5,103,160 + +0.5 5,103,160 + +0.9 5,103,161 - -0.4 5,103,161 - +0.7 5,103,161 - -1.0 5,103,161 - -0.6 5,103,161 - -0.5 5,103,286 + -0.9 5,103,573 - Psyr_4279 0.34 +0.7 5,103,573 - Psyr_4279 0.34 -3.3 5,103,667 + Psyr_4279 0.42 +0.0 5,103,667 + Psyr_4279 0.42 -1.3 5,103,667 + Psyr_4279 0.42 -0.4 5,103,667 + Psyr_4279 0.42 -1.7 5,103,667 + Psyr_4279 0.42 -0.2 5,103,667 + Psyr_4279 0.42 -0.7 5,103,667 + Psyr_4279 0.42 +0.3 5,103,668 - Psyr_4279 0.42 -1.6 5,103,668 - Psyr_4279 0.42 +0.5 5,103,668 - Psyr_4279 0.42 -0.7 5,103,668 - Psyr_4279 0.42 +0.7 5,103,668 - Psyr_4279 0.42 +1.1 5,103,668 - Psyr_4279 0.42 +0.3 5,103,668 - Psyr_4279 0.42 +0.2 5,103,668 - Psyr_4279 0.42 -0.2 5,103,668 - Psyr_4279 0.42 -0.1 5,103,668 - Psyr_4279 0.42 -1.3 5,103,671 + Psyr_4279 0.43 -0.0 5,103,671 + Psyr_4279 0.43 -0.7 5,103,671 + Psyr_4279 0.43 -0.8 5,103,671 + Psyr_4279 0.43 -0.1 5,103,672 - Psyr_4279 0.43 +0.2 5,103,672 - Psyr_4279 0.43 -0.4 5,103,672 - Psyr_4279 0.43 -0.1 5,103,672 - Psyr_4279 0.43 -0.7 5,103,920 + Psyr_4279 0.65 +0.6 5,103,961 + Psyr_4279 0.69 +1.9 5,103,962 - Psyr_4279 0.69 +0.3 5,103,962 - Psyr_4279 0.69 -0.7 5,103,962 - Psyr_4279 0.69 -1.4 5,103,962 - Psyr_4279 0.69 -0.9 5,104,201 + Psyr_4279 0.90 -0.1 5,104,201 + Psyr_4279 0.90 -1.0 5,104,201 + Psyr_4279 0.90 -0.9 5,104,201 + Psyr_4279 0.90 +0.7 5,104,201 + Psyr_4279 0.90 +0.7 5,104,201 + Psyr_4279 0.90 +0.0 5,104,202 - +1.9 5,104,202 - +1.0 5,104,202 - +0.2 5,104,202 - -0.1 5,104,202 - +1.1 5,104,202 - +0.1 5,104,202 - -0.1 5,104,596 + -0.1 5,104,638 + -1.1 5,104,638 + -1.3 5,104,638 + -0.2 5,104,638 + +0.6 5,104,638 + +1.1 5,104,638 + -1.3 5,104,638 + +0.3 5,104,638 + -0.4 5,104,639 - -0.3 5,104,639 - -0.9 5,104,639 - -1.1 5,104,639 - -2.1 5,104,639 - +0.3 5,104,639 - -0.3 5,104,639 - -1.1 5,104,639 - -1.4 5,104,641 + +0.0 5,104,641 + -0.7 5,104,641 + -0.1 5,104,641 + +0.3 5,104,641 + -2.3 5,104,641 + -2.1 5,104,642 - -2.1 5,104,642 - -1.1 5,104,642 - -0.2 5,104,820 + Psyr_4281 0.22 +0.7 5,104,820 + Psyr_4281 0.22 -0.1 5,104,869 + Psyr_4281 0.27 -1.1 5,104,869 + Psyr_4281 0.27 +0.3 5,104,869 + Psyr_4281 0.27 -0.4 5,104,869 + Psyr_4281 0.27 -1.5 5,104,869 + Psyr_4281 0.27 +0.5 5,104,869 + Psyr_4281 0.27 -1.7 5,104,869 + Psyr_4281 0.27 -1.0 5,104,869 + Psyr_4281 0.27 -1.8 5,104,869 + Psyr_4281 0.27 +0.1 5,104,869 + Psyr_4281 0.27 -1.7 5,104,869 + Psyr_4281 0.27 +0.2 5,104,869 + Psyr_4281 0.27 +0.1 5,104,869 + Psyr_4281 0.27 -1.1 5,104,869 + Psyr_4281 0.27 -0.9 5,104,869 + Psyr_4281 0.27 +0.0 5,104,869 + Psyr_4281 0.27 +0.9 5,104,870 - Psyr_4281 0.27 -1.7 5,104,870 - Psyr_4281 0.27 -0.1 5,104,870 - Psyr_4281 0.27 +0.6 5,104,870 - Psyr_4281 0.27 +0.7 5,104,870 - Psyr_4281 0.27 -0.8 5,104,870 - Psyr_4281 0.27 -0.7 5,104,870 - Psyr_4281 0.27 -3.3 5,104,870 - Psyr_4281 0.27 -0.7 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 -0.7 5,104,870 - Psyr_4281 0.27 +0.4 5,104,870 - Psyr_4281 0.27 -0.5 5,104,870 - Psyr_4281 0.27 +0.3 5,104,870 - Psyr_4281 0.27 -1.4 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 -0.8 5,104,870 - Psyr_4281 0.27 -0.6 5,104,870 - Psyr_4281 0.27 -3.0 5,104,870 - Psyr_4281 0.27 -2.5 5,104,870 - Psyr_4281 0.27 -1.3 5,104,870 - Psyr_4281 0.27 -0.6 5,104,870 - Psyr_4281 0.27 -2.1 5,104,870 - Psyr_4281 0.27 -0.6 5,104,870 - Psyr_4281 0.27 -1.1 5,104,870 - Psyr_4281 0.27 +0.4 5,104,870 - Psyr_4281 0.27 +0.5 5,105,193 + Psyr_4281 0.59 -0.4 5,105,193 + Psyr_4281 0.59 -0.9 5,105,193 + Psyr_4281 0.59 -0.4 5,105,193 + Psyr_4281 0.59 -0.1 5,105,193 + Psyr_4281 0.59 -0.9 5,105,193 + Psyr_4281 0.59 -0.7 5,105,193 + Psyr_4281 0.59 +2.2 5,105,193 + Psyr_4281 0.59 +0.2 5,105,193 + Psyr_4281 0.59 -0.8 5,105,193 + Psyr_4281 0.59 -0.2 5,105,193 + Psyr_4281 0.59 -0.4 5,105,193 + Psyr_4281 0.59 -0.6 5,105,193 + Psyr_4281 0.59 -0.5 5,105,194 - Psyr_4281 0.59 -0.5 5,105,194 - Psyr_4281 0.59 +0.5 5,105,194 - Psyr_4281 0.59 +0.2 5,105,194 - Psyr_4281 0.59 +1.2 5,105,194 - Psyr_4281 0.59 -1.7 5,105,194 - Psyr_4281 0.59 -0.4 5,105,194 - Psyr_4281 0.59 +0.6 5,105,194 - Psyr_4281 0.59 -0.6 5,105,194 - Psyr_4281 0.59 +0.4 5,105,194 - Psyr_4281 0.59 +0.2 5,105,194 - Psyr_4281 0.59 -2.2
Or see this region's nucleotide sequence