Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4126 and Psyr_4127 are separated by 53 nucleotides Psyr_4127 and Psyr_4128 are separated by 58 nucleotides Psyr_4128 and Psyr_4129 are separated by 153 nucleotides
Psyr_4126: Psyr_4126 - adenylylsulfate kinase / sulfate adenylyltransferase subunit 1, at 4,914,883 to 4,916,781
_4126
Psyr_4127: Psyr_4127 - S23 ribosomal, at 4,916,835 to 4,917,176
_4127
Psyr_4128: Psyr_4128 - sulfate adenylyltransferase subunit 2, at 4,917,235 to 4,918,152
_4128
Psyr_4129: Psyr_4129 - Protein of unknown function DUF34, at 4,918,306 to 4,919,064
_4129
Position (kb) 4917
4918
4919 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4916.332 kb on - strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.333 kb on + strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.334 kb on - strand, within Psyr_4126 at 4916.433 kb on - strand, within Psyr_4126 at 4916.490 kb on - strand, within Psyr_4126 at 4916.490 kb on - strand, within Psyr_4126 at 4916.495 kb on + strand, within Psyr_4126 at 4916.627 kb on + strand at 4916.627 kb on + strand at 4916.627 kb on + strand at 4916.627 kb on + strand at 4916.627 kb on + strand at 4916.628 kb on - strand at 4916.628 kb on - strand at 4916.738 kb on + strand at 4916.739 kb on - strand at 4916.802 kb on + strand at 4916.802 kb on + strand at 4916.802 kb on + strand at 4916.802 kb on + strand at 4916.802 kb on + strand at 4916.802 kb on + strand at 4916.803 kb on - strand at 4916.803 kb on - strand at 4916.803 kb on - strand at 4916.803 kb on - strand at 4916.830 kb on + strand at 4916.836 kb on + strand at 4916.836 kb on + strand at 4916.836 kb on + strand at 4916.924 kb on + strand, within Psyr_4127 at 4916.924 kb on + strand, within Psyr_4127 at 4916.925 kb on - strand, within Psyr_4127 at 4916.925 kb on - strand, within Psyr_4127 at 4916.926 kb on + strand, within Psyr_4127 at 4916.927 kb on - strand at 4916.988 kb on - strand, within Psyr_4127 at 4916.989 kb on + strand, within Psyr_4127 at 4916.990 kb on - strand, within Psyr_4127 at 4916.990 kb on - strand, within Psyr_4127 at 4917.041 kb on + strand, within Psyr_4127 at 4917.042 kb on - strand, within Psyr_4127 at 4917.204 kb on + strand at 4917.223 kb on - strand at 4917.223 kb on - strand at 4917.223 kb on - strand at 4917.223 kb on - strand at 4917.242 kb on + strand at 4917.242 kb on + strand at 4917.243 kb on - strand at 4917.243 kb on - strand at 4917.530 kb on + strand, within Psyr_4128 at 4917.531 kb on - strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.560 kb on + strand, within Psyr_4128 at 4917.561 kb on - strand, within Psyr_4128 at 4917.561 kb on - strand, within Psyr_4128 at 4917.561 kb on - strand, within Psyr_4128 at 4917.561 kb on - strand, within Psyr_4128 at 4917.566 kb on + strand, within Psyr_4128 at 4917.566 kb on + strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.567 kb on - strand, within Psyr_4128 at 4917.711 kb on - strand, within Psyr_4128 at 4917.938 kb on + strand, within Psyr_4128 at 4917.939 kb on - strand, within Psyr_4128 at 4917.993 kb on + strand, within Psyr_4128 at 4918.230 kb on + strand at 4918.230 kb on + strand at 4918.231 kb on - strand at 4918.231 kb on - strand at 4918.231 kb on - strand at 4918.279 kb on + strand at 4918.279 kb on + strand at 4918.280 kb on - strand at 4918.280 kb on - strand at 4918.285 kb on + strand at 4918.285 kb on + strand at 4918.285 kb on + strand at 4918.286 kb on - strand at 4918.335 kb on + strand at 4918.335 kb on + strand at 4918.335 kb on + strand at 4918.335 kb on + strand at 4918.335 kb on + strand at 4918.335 kb on + strand at 4918.336 kb on - strand at 4918.336 kb on - strand at 4918.336 kb on - strand at 4918.336 kb on - strand at 4918.365 kb on - strand at 4918.365 kb on - strand at 4918.365 kb on - strand at 4918.446 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.517 kb on + strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.518 kb on - strand, within Psyr_4129 at 4918.772 kb on + strand, within Psyr_4129 at 4918.772 kb on + strand, within Psyr_4129 at 4918.773 kb on - strand, within Psyr_4129 at 4918.828 kb on - strand, within Psyr_4129 at 4918.862 kb on + strand, within Psyr_4129 at 4918.994 kb on + strand at 4918.994 kb on + strand at 4918.994 kb on + strand at 4919.022 kb on - strand at 4919.064 kb on + strand at 4919.065 kb on - strand at 4919.075 kb on + strand at 4919.075 kb on + strand at 4919.075 kb on + strand at 4919.075 kb on + strand at 4919.075 kb on + strand at 4919.075 kb on + strand at 4919.076 kb on - strand at 4919.076 kb on - strand at 4919.076 kb on - strand at 4919.079 kb on + strand at 4919.079 kb on + strand at 4919.079 kb on + strand at 4919.079 kb on + strand at 4919.079 kb on + strand at 4919.079 kb on + strand at 4919.079 kb on + strand at 4919.080 kb on - strand at 4919.080 kb on - strand at 4919.101 kb on + strand at 4919.101 kb on + strand at 4919.102 kb on - strand at 4919.102 kb on - strand at 4919.102 kb on - strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.107 kb on + strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.108 kb on - strand at 4919.109 kb on + strand at 4919.109 kb on + strand at 4919.109 kb on + strand at 4919.110 kb on - strand at 4919.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 4,916,332 - Psyr_4126 0.76 -0.6 4,916,333 + Psyr_4126 0.76 +1.6 4,916,333 + Psyr_4126 0.76 -2.0 4,916,333 + Psyr_4126 0.76 -0.3 4,916,333 + Psyr_4126 0.76 +0.4 4,916,333 + Psyr_4126 0.76 -1.7 4,916,333 + Psyr_4126 0.76 -0.5 4,916,333 + Psyr_4126 0.76 -0.8 4,916,333 + Psyr_4126 0.76 -0.5 4,916,333 + Psyr_4126 0.76 +0.2 4,916,333 + Psyr_4126 0.76 +0.1 4,916,333 + Psyr_4126 0.76 +0.4 4,916,333 + Psyr_4126 0.76 -0.4 4,916,333 + Psyr_4126 0.76 +1.4 4,916,333 + Psyr_4126 0.76 +0.6 4,916,333 + Psyr_4126 0.76 +0.1 4,916,334 - Psyr_4126 0.76 +0.9 4,916,334 - Psyr_4126 0.76 +1.9 4,916,334 - Psyr_4126 0.76 +1.9 4,916,334 - Psyr_4126 0.76 -0.5 4,916,334 - Psyr_4126 0.76 +0.9 4,916,334 - Psyr_4126 0.76 +0.0 4,916,334 - Psyr_4126 0.76 -0.3 4,916,334 - Psyr_4126 0.76 +0.1 4,916,433 - Psyr_4126 0.82 -1.7 4,916,490 - Psyr_4126 0.85 -1.6 4,916,490 - Psyr_4126 0.85 -0.1 4,916,495 + Psyr_4126 0.85 -0.7 4,916,627 + +0.5 4,916,627 + -1.5 4,916,627 + +0.9 4,916,627 + -0.6 4,916,627 + +0.0 4,916,628 - +0.6 4,916,628 - -0.2 4,916,738 + +0.1 4,916,739 - +1.2 4,916,802 + -1.0 4,916,802 + -0.6 4,916,802 + +0.1 4,916,802 + +0.7 4,916,802 + -0.8 4,916,802 + -1.1 4,916,803 - +1.0 4,916,803 - +1.0 4,916,803 - -0.3 4,916,803 - +0.6 4,916,830 + -0.8 4,916,836 + -1.0 4,916,836 + -0.4 4,916,836 + -0.7 4,916,924 + Psyr_4127 0.26 +1.3 4,916,924 + Psyr_4127 0.26 +0.9 4,916,925 - Psyr_4127 0.26 +0.1 4,916,925 - Psyr_4127 0.26 +1.4 4,916,926 + Psyr_4127 0.27 +1.3 4,916,927 - +3.3 4,916,988 - Psyr_4127 0.45 -0.1 4,916,989 + Psyr_4127 0.45 -1.5 4,916,990 - Psyr_4127 0.45 -0.4 4,916,990 - Psyr_4127 0.45 -0.4 4,917,041 + Psyr_4127 0.60 -2.2 4,917,042 - Psyr_4127 0.61 +0.4 4,917,204 + -2.7 4,917,223 - -1.0 4,917,223 - +0.9 4,917,223 - +0.3 4,917,223 - +0.5 4,917,242 + +0.9 4,917,242 + +0.9 4,917,243 - -0.6 4,917,243 - +2.7 4,917,530 + Psyr_4128 0.32 +0.9 4,917,531 - Psyr_4128 0.32 +1.1 4,917,560 + Psyr_4128 0.35 -0.8 4,917,560 + Psyr_4128 0.35 +0.8 4,917,560 + Psyr_4128 0.35 +1.0 4,917,560 + Psyr_4128 0.35 -0.6 4,917,560 + Psyr_4128 0.35 -1.6 4,917,560 + Psyr_4128 0.35 +1.2 4,917,560 + Psyr_4128 0.35 -1.0 4,917,560 + Psyr_4128 0.35 +0.1 4,917,560 + Psyr_4128 0.35 -1.0 4,917,560 + Psyr_4128 0.35 +1.0 4,917,560 + Psyr_4128 0.35 -0.1 4,917,560 + Psyr_4128 0.35 +0.4 4,917,560 + Psyr_4128 0.35 +0.7 4,917,560 + Psyr_4128 0.35 -0.2 4,917,560 + Psyr_4128 0.35 +0.1 4,917,561 - Psyr_4128 0.36 +0.3 4,917,561 - Psyr_4128 0.36 -0.3 4,917,561 - Psyr_4128 0.36 -0.2 4,917,561 - Psyr_4128 0.36 -0.9 4,917,566 + Psyr_4128 0.36 -1.1 4,917,566 + Psyr_4128 0.36 +1.5 4,917,567 - Psyr_4128 0.36 +0.3 4,917,567 - Psyr_4128 0.36 +0.4 4,917,567 - Psyr_4128 0.36 -0.5 4,917,567 - Psyr_4128 0.36 -0.1 4,917,567 - Psyr_4128 0.36 -1.0 4,917,567 - Psyr_4128 0.36 -1.1 4,917,567 - Psyr_4128 0.36 +0.1 4,917,567 - Psyr_4128 0.36 -0.3 4,917,711 - Psyr_4128 0.52 -0.6 4,917,938 + Psyr_4128 0.77 -1.7 4,917,939 - Psyr_4128 0.77 -0.0 4,917,993 + Psyr_4128 0.83 -0.7 4,918,230 + -0.5 4,918,230 + +0.2 4,918,231 - -0.5 4,918,231 - +0.4 4,918,231 - +0.2 4,918,279 + -0.5 4,918,279 + +1.3 4,918,280 - -1.3 4,918,280 - +0.8 4,918,285 + -1.0 4,918,285 + -0.1 4,918,285 + -1.5 4,918,286 - +0.9 4,918,335 + +0.9 4,918,335 + -1.8 4,918,335 + +0.4 4,918,335 + -0.7 4,918,335 + -0.6 4,918,335 + -0.9 4,918,336 - +0.4 4,918,336 - +0.3 4,918,336 - +0.3 4,918,336 - -0.0 4,918,365 - -0.1 4,918,365 - +0.3 4,918,365 - +0.0 4,918,446 + Psyr_4129 0.18 +0.9 4,918,517 + Psyr_4129 0.28 -1.3 4,918,517 + Psyr_4129 0.28 -0.9 4,918,517 + Psyr_4129 0.28 +1.1 4,918,517 + Psyr_4129 0.28 +1.0 4,918,517 + Psyr_4129 0.28 -0.1 4,918,517 + Psyr_4129 0.28 -0.1 4,918,517 + Psyr_4129 0.28 +0.3 4,918,517 + Psyr_4129 0.28 -0.7 4,918,517 + Psyr_4129 0.28 +0.4 4,918,517 + Psyr_4129 0.28 -0.6 4,918,517 + Psyr_4129 0.28 +1.3 4,918,517 + Psyr_4129 0.28 +0.6 4,918,517 + Psyr_4129 0.28 -0.1 4,918,518 - Psyr_4129 0.28 +1.2 4,918,518 - Psyr_4129 0.28 +0.2 4,918,518 - Psyr_4129 0.28 +1.4 4,918,518 - Psyr_4129 0.28 -0.5 4,918,518 - Psyr_4129 0.28 +1.9 4,918,518 - Psyr_4129 0.28 +2.3 4,918,518 - Psyr_4129 0.28 +0.6 4,918,518 - Psyr_4129 0.28 -0.3 4,918,518 - Psyr_4129 0.28 +0.5 4,918,518 - Psyr_4129 0.28 -1.3 4,918,518 - Psyr_4129 0.28 +0.9 4,918,518 - Psyr_4129 0.28 +0.6 4,918,518 - Psyr_4129 0.28 -1.0 4,918,518 - Psyr_4129 0.28 +1.1 4,918,518 - Psyr_4129 0.28 -0.6 4,918,518 - Psyr_4129 0.28 -0.5 4,918,772 + Psyr_4129 0.61 -0.8 4,918,772 + Psyr_4129 0.61 -0.3 4,918,773 - Psyr_4129 0.62 -0.1 4,918,828 - Psyr_4129 0.69 +0.0 4,918,862 + Psyr_4129 0.73 +1.3 4,918,994 + -1.1 4,918,994 + -1.0 4,918,994 + +0.5 4,919,022 - +0.6 4,919,064 + -0.1 4,919,065 - -0.3 4,919,075 + -0.5 4,919,075 + -2.1 4,919,075 + +1.3 4,919,075 + +1.3 4,919,075 + +0.5 4,919,075 + +1.9 4,919,076 - -0.7 4,919,076 - -0.5 4,919,076 - -0.7 4,919,079 + +1.0 4,919,079 + +0.1 4,919,079 + -1.0 4,919,079 + +0.9 4,919,079 + +0.0 4,919,079 + +1.9 4,919,079 + +0.2 4,919,080 - -0.6 4,919,080 - -1.6 4,919,101 + +0.2 4,919,101 + +0.6 4,919,102 - -1.1 4,919,102 - -0.1 4,919,102 - -0.2 4,919,107 + -0.3 4,919,107 + +0.2 4,919,107 + +0.2 4,919,107 + -0.6 4,919,107 + -0.8 4,919,107 + -0.5 4,919,107 + -0.0 4,919,107 + +0.6 4,919,107 + +0.3 4,919,108 - +0.0 4,919,108 - -0.1 4,919,108 - +0.4 4,919,108 - +1.7 4,919,108 - +0.7 4,919,108 - +0.6 4,919,108 - +2.2 4,919,108 - -0.1 4,919,108 - -0.3 4,919,108 - -0.6 4,919,109 + +0.0 4,919,109 + -1.8 4,919,109 + -0.3 4,919,110 - +0.2 4,919,110 - +0.6
Or see this region's nucleotide sequence