Experiment: KB with Nitrofurantoin 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3869 and Psyr_3870 are separated by 158 nucleotides Psyr_3870 and Psyr_3871 are separated by 232 nucleotides Psyr_3871 and Psyr_3872 are separated by 670 nucleotides
Psyr_3869: Psyr_3869 - phage repressor protein, Serine peptidase, MEROPS family S24, at 4,607,928 to 4,608,584
_3869
Psyr_3870: Psyr_3870 - SEC-C motif protein, at 4,608,743 to 4,608,943
_3870
Psyr_3871: Psyr_3871 - Penicillin amidase, at 4,609,176 to 4,611,650
_3871
Psyr_3872: Psyr_3872 - conserved hypothetical protein, at 4,612,321 to 4,613,367
_3872
Position (kb) 4609
4610
4611
4612 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4608.223 kb on + strand, within Psyr_3869 at 4608.223 kb on + strand, within Psyr_3869 at 4608.223 kb on + strand, within Psyr_3869 at 4608.224 kb on - strand, within Psyr_3869 at 4608.238 kb on + strand, within Psyr_3869 at 4608.262 kb on + strand, within Psyr_3869 at 4608.566 kb on + strand at 4608.567 kb on - strand at 4608.567 kb on - strand at 4608.702 kb on - strand at 4608.708 kb on + strand at 4608.709 kb on - strand at 4608.724 kb on + strand at 4608.724 kb on + strand at 4608.724 kb on + strand at 4608.725 kb on - strand at 4608.735 kb on + strand at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.862 kb on + strand, within Psyr_3870 at 4608.862 kb on + strand, within Psyr_3870 at 4608.862 kb on + strand, within Psyr_3870 at 4608.863 kb on - strand, within Psyr_3870 at 4608.865 kb on + strand, within Psyr_3870 at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.093 kb on - strand at 4609.093 kb on - strand at 4609.093 kb on - strand at 4609.138 kb on + strand at 4609.138 kb on + strand at 4609.150 kb on + strand at 4609.150 kb on + strand at 4609.150 kb on + strand at 4609.150 kb on + strand at 4609.150 kb on + strand at 4609.151 kb on - strand at 4609.151 kb on - strand at 4609.372 kb on + strand at 4609.373 kb on - strand at 4609.386 kb on + strand at 4609.386 kb on + strand at 4609.387 kb on - strand at 4609.387 kb on - strand at 4609.413 kb on + strand at 4609.560 kb on + strand, within Psyr_3871 at 4609.560 kb on + strand, within Psyr_3871 at 4609.560 kb on + strand, within Psyr_3871 at 4609.560 kb on + strand, within Psyr_3871 at 4609.561 kb on - strand, within Psyr_3871 at 4609.561 kb on - strand, within Psyr_3871 at 4609.561 kb on - strand, within Psyr_3871 at 4609.602 kb on + strand, within Psyr_3871 at 4609.602 kb on + strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.624 kb on - strand, within Psyr_3871 at 4609.674 kb on + strand, within Psyr_3871 at 4609.674 kb on + strand, within Psyr_3871 at 4609.675 kb on - strand, within Psyr_3871 at 4609.675 kb on - strand, within Psyr_3871 at 4609.687 kb on - strand, within Psyr_3871 at 4609.825 kb on - strand, within Psyr_3871 at 4609.841 kb on - strand, within Psyr_3871 at 4610.085 kb on + strand, within Psyr_3871 at 4610.086 kb on - strand, within Psyr_3871 at 4610.232 kb on + strand, within Psyr_3871 at 4610.232 kb on + strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.320 kb on - strand, within Psyr_3871 at 4610.453 kb on + strand, within Psyr_3871 at 4610.453 kb on + strand, within Psyr_3871 at 4610.453 kb on + strand, within Psyr_3871 at 4610.453 kb on + strand, within Psyr_3871 at 4610.454 kb on - strand, within Psyr_3871 at 4610.454 kb on - strand, within Psyr_3871 at 4610.613 kb on + strand, within Psyr_3871 at 4610.613 kb on + strand, within Psyr_3871 at 4610.613 kb on + strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.823 kb on + strand, within Psyr_3871 at 4610.823 kb on + strand at 4610.824 kb on - strand, within Psyr_3871 at 4610.824 kb on - strand, within Psyr_3871 at 4610.987 kb on + strand, within Psyr_3871 at 4610.987 kb on + strand, within Psyr_3871 at 4610.988 kb on - strand, within Psyr_3871 at 4610.988 kb on - strand, within Psyr_3871 at 4611.010 kb on - strand, within Psyr_3871 at 4611.010 kb on - strand, within Psyr_3871 at 4611.115 kb on - strand, within Psyr_3871 at 4611.397 kb on + strand, within Psyr_3871 at 4611.461 kb on - strand at 4611.461 kb on - strand at 4611.531 kb on + strand at 4611.532 kb on - strand at 4611.600 kb on + strand at 4611.601 kb on - strand at 4611.601 kb on - strand at 4611.648 kb on + strand at 4611.648 kb on + strand at 4611.648 kb on + strand at 4611.649 kb on - strand at 4611.649 kb on - strand at 4611.701 kb on + strand at 4611.701 kb on + strand at 4611.702 kb on - strand at 4611.708 kb on - strand at 4611.708 kb on - strand at 4611.708 kb on - strand at 4611.731 kb on + strand at 4611.830 kb on + strand at 4611.830 kb on + strand at 4611.830 kb on + strand at 4611.830 kb on + strand at 4611.831 kb on - strand at 4611.831 kb on - strand at 4611.831 kb on - strand at 4611.831 kb on - strand at 4611.879 kb on - strand at 4611.879 kb on - strand at 4611.879 kb on - strand at 4612.059 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.291 kb on - strand at 4612.291 kb on - strand at 4612.291 kb on - strand at 4612.294 kb on + strand at 4612.294 kb on + strand at 4612.294 kb on + strand at 4612.294 kb on + strand at 4612.295 kb on - strand at 4612.295 kb on - strand at 4612.295 kb on - strand at 4612.295 kb on - strand at 4612.354 kb on + strand at 4612.375 kb on + strand at 4612.375 kb on + strand at 4612.375 kb on + strand at 4612.375 kb on + strand at 4612.376 kb on - strand at 4612.376 kb on - strand at 4612.376 kb on - strand at 4612.456 kb on + strand, within Psyr_3872 at 4612.456 kb on + strand, within Psyr_3872 at 4612.456 kb on + strand, within Psyr_3872 at 4612.482 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml remove 4,608,223 + Psyr_3869 0.45 +0.4 4,608,223 + Psyr_3869 0.45 -0.7 4,608,223 + Psyr_3869 0.45 -1.2 4,608,224 - Psyr_3869 0.45 +0.4 4,608,238 + Psyr_3869 0.47 +0.8 4,608,262 + Psyr_3869 0.51 -0.1 4,608,566 + -0.0 4,608,567 - -1.1 4,608,567 - +1.2 4,608,702 - -1.5 4,608,708 + -1.0 4,608,709 - -0.2 4,608,724 + -0.7 4,608,724 + +0.1 4,608,724 + +0.5 4,608,725 - -0.4 4,608,735 + +0.3 4,608,819 + Psyr_3870 0.38 -0.7 4,608,819 + Psyr_3870 0.38 +0.8 4,608,819 + Psyr_3870 0.38 +0.1 4,608,819 + Psyr_3870 0.38 -0.1 4,608,819 + Psyr_3870 0.38 -0.6 4,608,819 + Psyr_3870 0.38 +0.4 4,608,819 + Psyr_3870 0.38 +1.5 4,608,819 + Psyr_3870 0.38 +0.8 4,608,819 + Psyr_3870 0.38 -0.2 4,608,820 - Psyr_3870 0.38 -0.3 4,608,820 - Psyr_3870 0.38 +1.6 4,608,820 - Psyr_3870 0.38 -0.2 4,608,820 - Psyr_3870 0.38 -0.5 4,608,820 - Psyr_3870 0.38 -0.1 4,608,820 - Psyr_3870 0.38 -1.2 4,608,820 - Psyr_3870 0.38 +1.1 4,608,820 - Psyr_3870 0.38 +0.6 4,608,820 - Psyr_3870 0.38 +0.4 4,608,820 - Psyr_3870 0.38 -0.3 4,608,820 - Psyr_3870 0.38 +0.4 4,608,862 + Psyr_3870 0.59 -0.6 4,608,862 + Psyr_3870 0.59 -1.2 4,608,862 + Psyr_3870 0.59 +0.4 4,608,863 - Psyr_3870 0.60 +0.5 4,608,865 + Psyr_3870 0.61 -0.2 4,609,019 + -0.4 4,609,019 + +0.8 4,609,019 + -1.8 4,609,019 + +1.5 4,609,019 + +0.9 4,609,019 + -0.1 4,609,019 + -2.1 4,609,020 - -0.6 4,609,020 - +0.2 4,609,020 - -0.5 4,609,093 - -0.9 4,609,093 - -0.1 4,609,093 - +0.8 4,609,138 + +1.0 4,609,138 + +0.2 4,609,150 + -1.2 4,609,150 + -0.6 4,609,150 + -0.2 4,609,150 + -0.6 4,609,150 + +0.5 4,609,151 - +0.8 4,609,151 - +1.1 4,609,372 + +1.2 4,609,373 - -0.6 4,609,386 + +0.8 4,609,386 + -0.2 4,609,387 - +1.8 4,609,387 - +0.8 4,609,413 + +0.3 4,609,560 + Psyr_3871 0.16 -0.2 4,609,560 + Psyr_3871 0.16 -0.5 4,609,560 + Psyr_3871 0.16 +0.0 4,609,560 + Psyr_3871 0.16 -0.4 4,609,561 - Psyr_3871 0.16 +0.9 4,609,561 - Psyr_3871 0.16 +1.4 4,609,561 - Psyr_3871 0.16 +0.8 4,609,602 + Psyr_3871 0.17 +0.8 4,609,602 + Psyr_3871 0.17 +0.6 4,609,603 - Psyr_3871 0.17 -0.6 4,609,603 - Psyr_3871 0.17 +0.6 4,609,603 - Psyr_3871 0.17 +0.0 4,609,603 - Psyr_3871 0.17 -0.4 4,609,603 - Psyr_3871 0.17 +0.2 4,609,624 - Psyr_3871 0.18 +0.2 4,609,674 + Psyr_3871 0.20 -0.7 4,609,674 + Psyr_3871 0.20 +1.5 4,609,675 - Psyr_3871 0.20 +0.8 4,609,675 - Psyr_3871 0.20 +0.5 4,609,687 - Psyr_3871 0.21 +0.9 4,609,825 - Psyr_3871 0.26 -1.0 4,609,841 - Psyr_3871 0.27 +0.9 4,610,085 + Psyr_3871 0.37 -0.2 4,610,086 - Psyr_3871 0.37 +0.9 4,610,232 + Psyr_3871 0.43 +1.2 4,610,232 + Psyr_3871 0.43 +1.1 4,610,233 - Psyr_3871 0.43 +0.2 4,610,233 - Psyr_3871 0.43 -1.1 4,610,233 - Psyr_3871 0.43 -0.1 4,610,233 - Psyr_3871 0.43 -0.4 4,610,233 - Psyr_3871 0.43 -0.3 4,610,320 - Psyr_3871 0.46 -0.2 4,610,453 + Psyr_3871 0.52 +2.1 4,610,453 + Psyr_3871 0.52 +0.2 4,610,453 + Psyr_3871 0.52 +0.6 4,610,453 + Psyr_3871 0.52 +0.9 4,610,454 - Psyr_3871 0.52 +0.9 4,610,454 - Psyr_3871 0.52 -0.2 4,610,613 + Psyr_3871 0.58 +1.0 4,610,613 + Psyr_3871 0.58 -0.8 4,610,613 + Psyr_3871 0.58 -0.4 4,610,614 - Psyr_3871 0.58 -0.4 4,610,614 - Psyr_3871 0.58 +0.3 4,610,614 - Psyr_3871 0.58 +0.9 4,610,614 - Psyr_3871 0.58 -1.2 4,610,614 - Psyr_3871 0.58 +0.5 4,610,614 - Psyr_3871 0.58 -1.1 4,610,823 + Psyr_3871 0.67 -0.0 4,610,823 + -1.2 4,610,824 - Psyr_3871 0.67 +0.0 4,610,824 - Psyr_3871 0.67 -0.2 4,610,987 + Psyr_3871 0.73 -0.3 4,610,987 + Psyr_3871 0.73 +0.2 4,610,988 - Psyr_3871 0.73 -1.7 4,610,988 - Psyr_3871 0.73 -0.8 4,611,010 - Psyr_3871 0.74 -0.4 4,611,010 - Psyr_3871 0.74 +0.4 4,611,115 - Psyr_3871 0.78 +0.5 4,611,397 + Psyr_3871 0.90 +1.1 4,611,461 - +1.0 4,611,461 - -0.4 4,611,531 + +0.9 4,611,532 - +0.5 4,611,600 + -2.0 4,611,601 - +1.3 4,611,601 - -1.5 4,611,648 + +1.0 4,611,648 + +2.0 4,611,648 + -0.0 4,611,649 - +0.0 4,611,649 - -1.2 4,611,701 + -0.7 4,611,701 + +0.4 4,611,702 - -0.1 4,611,708 - +0.3 4,611,708 - +0.2 4,611,708 - +1.2 4,611,731 + -0.2 4,611,830 + +0.8 4,611,830 + +1.6 4,611,830 + +0.8 4,611,830 + +2.9 4,611,831 - +0.5 4,611,831 - -0.4 4,611,831 - +1.6 4,611,831 - -0.7 4,611,879 - +0.8 4,611,879 - +0.8 4,611,879 - +0.8 4,612,059 + +0.9 4,612,290 + -0.2 4,612,290 + +1.8 4,612,290 + +0.8 4,612,290 + -0.7 4,612,290 + +0.9 4,612,290 + +1.1 4,612,290 + +0.5 4,612,291 - +1.2 4,612,291 - -2.2 4,612,291 - -0.0 4,612,294 + +0.3 4,612,294 + -0.5 4,612,294 + +0.4 4,612,294 + +1.1 4,612,295 - +0.3 4,612,295 - -0.5 4,612,295 - +0.7 4,612,295 - -1.1 4,612,354 + -0.5 4,612,375 + -0.4 4,612,375 + +0.0 4,612,375 + +1.9 4,612,375 + +0.0 4,612,376 - +1.5 4,612,376 - +0.6 4,612,376 - -0.2 4,612,456 + Psyr_3872 0.13 -1.4 4,612,456 + Psyr_3872 0.13 +1.4 4,612,456 + Psyr_3872 0.13 -0.5 4,612,482 + Psyr_3872 0.15 -0.7 4,612,589 + Psyr_3872 0.26 +0.0 4,612,589 + Psyr_3872 0.26 +0.5 4,612,589 + Psyr_3872 0.26 +0.0 4,612,589 + Psyr_3872 0.26 +1.2 4,612,589 + Psyr_3872 0.26 -0.8 4,612,589 + Psyr_3872 0.26 -1.2 4,612,589 + Psyr_3872 0.26 +0.2 4,612,590 - Psyr_3872 0.26 -1.5 4,612,590 - Psyr_3872 0.26 -0.1 4,612,590 - Psyr_3872 0.26 +0.5 4,612,590 - Psyr_3872 0.26 -1.8 4,612,590 - Psyr_3872 0.26 +1.1 4,612,590 - Psyr_3872 0.26 -1.0 4,612,590 - Psyr_3872 0.26 +1.8
Or see this region's nucleotide sequence