Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3745

Experiment: KB with Nitrofurantoin 125 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3744 and Psyr_3745 overlap by 11 nucleotidesPsyr_3745 and Psyr_3746 are separated by 69 nucleotides Psyr_3744: Psyr_3744 - Protein of unknown function DUF214, at 4,459,890 to 4,462,370 _3744 Psyr_3745: Psyr_3745 - conserved hypothetical protein, at 4,462,360 to 4,463,439 _3745 Psyr_3746: Psyr_3746 - hypothetical protein, at 4,463,509 to 4,464,039 _3746 Position (kb) 4462 4463 4464Strain fitness (log2 ratio) -2 -1 0 1 2at 4461.405 kb on + strand, within Psyr_3744at 4461.405 kb on + strand, within Psyr_3744at 4461.405 kb on + strand, within Psyr_3744at 4461.405 kb on + strand, within Psyr_3744at 4461.405 kb on + strand, within Psyr_3744at 4461.405 kb on + strand, within Psyr_3744at 4461.405 kb on + strand, within Psyr_3744at 4461.406 kb on - strand, within Psyr_3744at 4461.406 kb on - strand, within Psyr_3744at 4461.406 kb on - strand, within Psyr_3744at 4461.406 kb on - strand, within Psyr_3744at 4461.406 kb on - strand, within Psyr_3744at 4461.406 kb on - strand, within Psyr_3744at 4461.406 kb on - strand, within Psyr_3744at 4461.558 kb on + strand, within Psyr_3744at 4461.681 kb on - strand, within Psyr_3744at 4461.681 kb on - strand, within Psyr_3744at 4461.681 kb on - strand, within Psyr_3744at 4461.735 kb on + strand, within Psyr_3744at 4461.735 kb on + strand, within Psyr_3744at 4461.735 kb on + strand, within Psyr_3744at 4461.736 kb on - strand, within Psyr_3744at 4461.736 kb on - strand, within Psyr_3744at 4461.744 kb on + strand, within Psyr_3744at 4461.744 kb on + strand, within Psyr_3744at 4461.953 kb on + strand, within Psyr_3744at 4461.953 kb on + strand, within Psyr_3744at 4461.953 kb on + strand, within Psyr_3744at 4461.954 kb on - strand, within Psyr_3744at 4461.954 kb on - strand, within Psyr_3744at 4461.954 kb on - strand, within Psyr_3744at 4461.954 kb on - strand, within Psyr_3744at 4461.954 kb on - strand, within Psyr_3744at 4462.342 kb on + strandat 4462.342 kb on + strandat 4462.368 kb on + strandat 4462.369 kb on - strandat 4462.369 kb on - strandat 4462.369 kb on - strandat 4462.472 kb on - strand, within Psyr_3745at 4462.472 kb on - strand, within Psyr_3745at 4462.472 kb on - strand, within Psyr_3745at 4462.472 kb on - strand, within Psyr_3745at 4462.552 kb on + strand, within Psyr_3745at 4462.552 kb on + strand, within Psyr_3745at 4462.553 kb on - strand, within Psyr_3745at 4462.553 kb on - strand, within Psyr_3745at 4462.553 kb on - strand, within Psyr_3745at 4462.553 kb on - strand, within Psyr_3745at 4462.553 kb on - strand, within Psyr_3745at 4462.698 kb on + strand, within Psyr_3745at 4462.698 kb on + strand, within Psyr_3745at 4462.699 kb on - strand, within Psyr_3745at 4462.711 kb on + strand, within Psyr_3745at 4462.711 kb on + strand, within Psyr_3745at 4462.711 kb on + strand, within Psyr_3745at 4462.711 kb on + strand, within Psyr_3745at 4462.711 kb on + strand, within Psyr_3745at 4462.711 kb on + strand, within Psyr_3745at 4462.711 kb on + strand, within Psyr_3745at 4462.712 kb on - strand, within Psyr_3745at 4462.712 kb on - strand, within Psyr_3745at 4462.712 kb on - strand, within Psyr_3745at 4462.712 kb on - strand, within Psyr_3745at 4462.712 kb on - strand, within Psyr_3745at 4462.801 kb on - strand, within Psyr_3745at 4462.924 kb on + strand, within Psyr_3745at 4462.957 kb on + strand, within Psyr_3745at 4462.957 kb on + strand, within Psyr_3745at 4462.958 kb on - strand, within Psyr_3745at 4462.960 kb on + strand, within Psyr_3745at 4462.960 kb on + strand, within Psyr_3745at 4462.960 kb on + strand, within Psyr_3745at 4462.960 kb on + strand, within Psyr_3745at 4462.961 kb on - strand, within Psyr_3745at 4462.961 kb on - strand, within Psyr_3745at 4462.961 kb on - strand, within Psyr_3745at 4462.963 kb on + strand, within Psyr_3745at 4462.963 kb on + strand, within Psyr_3745at 4462.964 kb on - strand, within Psyr_3745at 4462.964 kb on - strand, within Psyr_3745at 4462.964 kb on - strand, within Psyr_3745at 4462.964 kb on - strand, within Psyr_3745at 4462.964 kb on - strand, within Psyr_3745at 4463.138 kb on - strand, within Psyr_3745at 4463.268 kb on + strand, within Psyr_3745at 4463.268 kb on + strand, within Psyr_3745at 4463.268 kb on + strand, within Psyr_3745at 4463.269 kb on - strand, within Psyr_3745at 4463.269 kb on - strand, within Psyr_3745at 4463.269 kb on - strand, within Psyr_3745at 4463.361 kb on + strandat 4463.528 kb on + strandat 4463.597 kb on + strand, within Psyr_3746at 4463.621 kb on + strand, within Psyr_3746at 4463.636 kb on - strand, within Psyr_3746at 4463.636 kb on - strand, within Psyr_3746at 4463.636 kb on - strand, within Psyr_3746at 4463.637 kb on + strand, within Psyr_3746at 4463.637 kb on + strand, within Psyr_3746at 4463.637 kb on + strand, within Psyr_3746at 4463.657 kb on + strand, within Psyr_3746at 4463.657 kb on + strand, within Psyr_3746at 4463.658 kb on - strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.759 kb on + strand, within Psyr_3746at 4463.759 kb on + strand, within Psyr_3746at 4463.759 kb on + strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.897 kb on - strand, within Psyr_3746at 4463.942 kb on + strand, within Psyr_3746at 4463.942 kb on + strand, within Psyr_3746at 4463.942 kb on + strand, within Psyr_3746at 4463.942 kb on + strand, within Psyr_3746at 4463.942 kb on + strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4464.103 kb on + strandat 4464.115 kb on + strandat 4464.115 kb on + strandat 4464.116 kb on - strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.167 kb on + strandat 4464.167 kb on + strandat 4464.167 kb on + strandat 4464.167 kb on + strandat 4464.168 kb on - strandat 4464.168 kb on - strandat 4464.168 kb on - strandat 4464.168 kb on - strandat 4464.206 kb on + strandat 4464.206 kb on + strandat 4464.207 kb on - strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.249 kb on - strandat 4464.249 kb on - strandat 4464.249 kb on - strandat 4464.249 kb on - strandat 4464.249 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
remove
4,461,405 + Psyr_3744 0.61 +0.0
4,461,405 + Psyr_3744 0.61 +0.1
4,461,405 + Psyr_3744 0.61 -2.5
4,461,405 + Psyr_3744 0.61 -1.9
4,461,405 + Psyr_3744 0.61 -2.1
4,461,405 + Psyr_3744 0.61 -1.6
4,461,405 + Psyr_3744 0.61 -0.3
4,461,406 - Psyr_3744 0.61 +1.0
4,461,406 - Psyr_3744 0.61 -1.5
4,461,406 - Psyr_3744 0.61 -0.8
4,461,406 - Psyr_3744 0.61 +0.9
4,461,406 - Psyr_3744 0.61 +0.7
4,461,406 - Psyr_3744 0.61 +2.0
4,461,406 - Psyr_3744 0.61 -0.5
4,461,558 + Psyr_3744 0.67 +0.1
4,461,681 - Psyr_3744 0.72 +1.7
4,461,681 - Psyr_3744 0.72 +0.4
4,461,681 - Psyr_3744 0.72 +0.1
4,461,735 + Psyr_3744 0.74 +0.7
4,461,735 + Psyr_3744 0.74 -0.1
4,461,735 + Psyr_3744 0.74 -0.6
4,461,736 - Psyr_3744 0.74 -0.2
4,461,736 - Psyr_3744 0.74 +0.1
4,461,744 + Psyr_3744 0.75 -0.1
4,461,744 + Psyr_3744 0.75 +1.0
4,461,953 + Psyr_3744 0.83 -0.8
4,461,953 + Psyr_3744 0.83 +0.7
4,461,953 + Psyr_3744 0.83 -0.8
4,461,954 - Psyr_3744 0.83 +0.7
4,461,954 - Psyr_3744 0.83 -1.9
4,461,954 - Psyr_3744 0.83 +1.3
4,461,954 - Psyr_3744 0.83 +0.2
4,461,954 - Psyr_3744 0.83 +0.7
4,462,342 + -0.6
4,462,342 + +1.0
4,462,368 + +0.1
4,462,369 - +0.5
4,462,369 - -0.1
4,462,369 - +0.7
4,462,472 - Psyr_3745 0.10 +1.1
4,462,472 - Psyr_3745 0.10 -1.3
4,462,472 - Psyr_3745 0.10 +1.1
4,462,472 - Psyr_3745 0.10 +0.6
4,462,552 + Psyr_3745 0.18 +0.2
4,462,552 + Psyr_3745 0.18 -0.3
4,462,553 - Psyr_3745 0.18 +0.4
4,462,553 - Psyr_3745 0.18 +1.1
4,462,553 - Psyr_3745 0.18 -0.1
4,462,553 - Psyr_3745 0.18 +0.2
4,462,553 - Psyr_3745 0.18 +0.3
4,462,698 + Psyr_3745 0.31 +1.7
4,462,698 + Psyr_3745 0.31 +0.6
4,462,699 - Psyr_3745 0.31 -0.3
4,462,711 + Psyr_3745 0.33 +0.7
4,462,711 + Psyr_3745 0.33 +0.3
4,462,711 + Psyr_3745 0.33 -0.5
4,462,711 + Psyr_3745 0.33 +0.3
4,462,711 + Psyr_3745 0.33 +1.7
4,462,711 + Psyr_3745 0.33 +1.7
4,462,711 + Psyr_3745 0.33 -0.9
4,462,712 - Psyr_3745 0.33 +0.1
4,462,712 - Psyr_3745 0.33 +2.1
4,462,712 - Psyr_3745 0.33 +0.0
4,462,712 - Psyr_3745 0.33 +0.3
4,462,712 - Psyr_3745 0.33 -1.7
4,462,801 - Psyr_3745 0.41 +0.6
4,462,924 + Psyr_3745 0.52 -0.0
4,462,957 + Psyr_3745 0.55 -0.9
4,462,957 + Psyr_3745 0.55 -0.6
4,462,958 - Psyr_3745 0.55 +1.9
4,462,960 + Psyr_3745 0.56 -0.3
4,462,960 + Psyr_3745 0.56 +0.6
4,462,960 + Psyr_3745 0.56 +1.0
4,462,960 + Psyr_3745 0.56 +1.0
4,462,961 - Psyr_3745 0.56 +0.0
4,462,961 - Psyr_3745 0.56 +0.1
4,462,961 - Psyr_3745 0.56 -0.4
4,462,963 + Psyr_3745 0.56 +1.1
4,462,963 + Psyr_3745 0.56 -1.0
4,462,964 - Psyr_3745 0.56 +0.4
4,462,964 - Psyr_3745 0.56 +0.3
4,462,964 - Psyr_3745 0.56 +1.0
4,462,964 - Psyr_3745 0.56 +0.7
4,462,964 - Psyr_3745 0.56 +0.5
4,463,138 - Psyr_3745 0.72 -1.3
4,463,268 + Psyr_3745 0.84 -0.2
4,463,268 + Psyr_3745 0.84 +0.3
4,463,268 + Psyr_3745 0.84 +1.3
4,463,269 - Psyr_3745 0.84 -1.0
4,463,269 - Psyr_3745 0.84 +0.1
4,463,269 - Psyr_3745 0.84 -1.0
4,463,361 + +0.4
4,463,528 + +1.4
4,463,597 + Psyr_3746 0.17 +0.3
4,463,621 + Psyr_3746 0.21 -0.2
4,463,636 - Psyr_3746 0.24 -0.8
4,463,636 - Psyr_3746 0.24 +0.3
4,463,636 - Psyr_3746 0.24 +0.3
4,463,637 + Psyr_3746 0.24 -0.9
4,463,637 + Psyr_3746 0.24 +0.1
4,463,637 + Psyr_3746 0.24 +0.3
4,463,657 + Psyr_3746 0.28 -0.6
4,463,657 + Psyr_3746 0.28 -0.3
4,463,658 - Psyr_3746 0.28 -0.3
4,463,708 + Psyr_3746 0.37 +0.7
4,463,708 + Psyr_3746 0.37 -0.1
4,463,708 + Psyr_3746 0.37 -0.4
4,463,708 + Psyr_3746 0.37 -1.3
4,463,708 + Psyr_3746 0.37 -0.2
4,463,709 - Psyr_3746 0.38 +0.7
4,463,709 - Psyr_3746 0.38 +0.6
4,463,709 - Psyr_3746 0.38 -0.2
4,463,709 - Psyr_3746 0.38 -1.3
4,463,709 - Psyr_3746 0.38 +1.1
4,463,709 - Psyr_3746 0.38 -1.0
4,463,709 - Psyr_3746 0.38 -1.1
4,463,759 + Psyr_3746 0.47 +1.3
4,463,759 + Psyr_3746 0.47 -1.2
4,463,759 + Psyr_3746 0.47 -1.3
4,463,760 - Psyr_3746 0.47 +0.0
4,463,760 - Psyr_3746 0.47 +1.7
4,463,760 - Psyr_3746 0.47 +0.1
4,463,760 - Psyr_3746 0.47 -0.5
4,463,760 - Psyr_3746 0.47 +0.1
4,463,760 - Psyr_3746 0.47 +1.5
4,463,897 - Psyr_3746 0.73 +0.1
4,463,942 + Psyr_3746 0.82 +0.4
4,463,942 + Psyr_3746 0.82 -0.5
4,463,942 + Psyr_3746 0.82 -0.5
4,463,942 + Psyr_3746 0.82 +1.4
4,463,942 + Psyr_3746 0.82 -0.3
4,463,943 - Psyr_3746 0.82 -0.2
4,463,943 - Psyr_3746 0.82 +0.6
4,463,943 - Psyr_3746 0.82 +1.3
4,463,943 - Psyr_3746 0.82 +0.1
4,464,103 + -0.1
4,464,115 + +0.2
4,464,115 + +0.2
4,464,116 - +1.3
4,464,163 + +0.7
4,464,163 + -1.6
4,464,163 + -0.0
4,464,163 + +0.7
4,464,163 + -1.9
4,464,163 + -0.3
4,464,163 + +0.5
4,464,163 + -1.2
4,464,164 - +0.3
4,464,164 - -0.1
4,464,164 - -1.0
4,464,164 - -1.1
4,464,164 - +0.7
4,464,164 - -0.6
4,464,164 - +0.9
4,464,167 + -1.3
4,464,167 + +2.2
4,464,167 + -0.4
4,464,167 + -0.1
4,464,168 - -0.9
4,464,168 - +0.4
4,464,168 - +0.2
4,464,168 - -0.6
4,464,206 + -0.7
4,464,206 + +1.0
4,464,207 - +1.0
4,464,248 + -0.8
4,464,248 + +0.4
4,464,248 + -1.2
4,464,248 + -0.3
4,464,248 + +0.3
4,464,248 + +1.6
4,464,249 - +0.7
4,464,249 - +1.3
4,464,249 - +0.7
4,464,249 - -1.3
4,464,249 - +0.8

Or see this region's nucleotide sequence